UHGV-0127690

Genome information

Genome length 19,001 bps

CDS count 25

Completeness 97.71% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127690
vOTU ID	vOTU-008125
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_316286
BioSample	SAMN00990321
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.08
Jumbo phage	No

Genome content
Genome length	19,001 bps
GC content	48.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	92.48%
Average CDS length	706.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127690_1	eggNOG-mapper	500632.CLONEX_03257	NA	NA
UHGV-0127690_1	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-0127690_9	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0127690_9	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0127690_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0127690_10	UniRef90	UniRef90_P04332	Portal protein	NA
UHGV-0127690_10	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0127690_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0127690_10	Structural annotation	PF05352, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-0127690_11	PHROG	phrog_2248	tail protein	tail
UHGV-0127690_11	UniRef90	UniRef90_A0A843HN65	Caud_tail_N domain-containing protein	NA
UHGV-0127690_11	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0127690_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0127690_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0127690_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0127690_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0127690_12	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0127690_12	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0127690_12	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0127690_12	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0127690_14	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0127690_14	PHROG	phrog_11037	NA	unknown function
UHGV-0127690_14	eggNOG-mapper	1260356.D920_01817	Phage minor structural protein	NA
UHGV-0127690_14	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0127690_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0127690_14	COG	COG4926	Phage-related protein	NA
UHGV-0127690_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0127690_15	PHROG	phrog_291	endolysin	lysis
UHGV-0127690_15	UniRef90	UniRef90_UPI000F548794	glycoside hydrolase family 25 protein	NA
UHGV-0127690_15	eggNOG-mapper	1111121.HMPREF1247_1247	PFAM glycoside hydrolase, family 10	NA
UHGV-0127690_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0127690_15	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0127690_15	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0127690_16	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0127690_16	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0127690_18	PHROG	phrog_4898	holin	lysis
UHGV-0127690_19	PHROG	phrog_2150	terminase	head and packaging
UHGV-0127690_19	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0127690_19	eggNOG-mapper	1094560.ME9_01572	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0127690_19	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0127690_19	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127690_20	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0127690_20	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0127690_20	UniRef90	UniRef90_A0A843GX60	DNA-directed DNA polymerase	NA
UHGV-0127690_20	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0127690_20	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0127690_20	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0127690_23	Structural annotation	PF17427	NA	NA
UHGV-0127690_25	eggNOG-mapper	326426.Bbr_1459	Acetyltransferase (GNAT) domain	NA
UHGV-0127690_25	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA