UHGV-0127770

Genome information

Genome length 41,347 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127770
vOTU ID	vOTU-045901
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323747
BioSample	SAMN00715140
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.3
Jumbo phage	No

Genome content
Genome length	41,347 bps
GC content	44.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.01%
Average CDS length	555.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127770_1	PHROG	phrog_27197	NA	unknown function
UHGV-0127770_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0127770_1	Structural annotation	NF007410	NA	NA
UHGV-0127770_2	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0127770_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0127770_2	UniRef90	UniRef90_A0A7X5CLJ7	Adenylyl-sulfate reductase	NA
UHGV-0127770_2	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0127770_2	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0127770_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0127770_2	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0127770_4	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127770_4	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0127770_4	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0127770_5	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0127770_5	UniRef90	UniRef90_UPI001D099DE7	replisome organizer	NA
UHGV-0127770_5	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0127770_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0127770_5	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0127770_6	PHROG	phrog_9804	NA	unknown function
UHGV-0127770_6	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0127770_6	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0127770_6	AcrCatalog	cluster_137185	NA	NA
UHGV-0127770_6	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0127770_6	Structural annotation	PF11417	NA	NA
UHGV-0127770_7	eggNOG-mapper	1235798.C817_05064	NA	NA
UHGV-0127770_7	Structural annotation	PF20063, TIGR01764	NA	NA
UHGV-0127770_8	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0127770_8	Structural annotation	PF02796, PF06257, COG2771, COG4466	NA	NA
UHGV-0127770_9	Structural annotation	PF02001, TIGR01636	NA	NA
UHGV-0127770_10	PHROG	phrog_1233	NA	unknown function
UHGV-0127770_10	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0127770_11	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0127770_11	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0127770_11	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0127770_11	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0127770_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127770_12	PHROG	phrog_10250	NA	unknown function
UHGV-0127770_12	UniRef90	UniRef90_A0A352CU28	PBSX family phage terminase large subunit	NA
UHGV-0127770_12	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0127770_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0127770_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0127770_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127770_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0127770_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127770_13	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0127770_13	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127770_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127770_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0127770_14	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0127770_14	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0127770_14	eggNOG-mapper	1280685.AUKC01000004_gene1632	Phage Mu protein F like protein	NA
UHGV-0127770_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0127770_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0127770_14	COG	COG2369	NA	NA
UHGV-0127770_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0127770_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0127770_15	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0127770_15	eggNOG-mapper	1158602.I590_02569	NA	NA
UHGV-0127770_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0127770_16	Structural annotation	PF06810	NA	NA
UHGV-0127770_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0127770_17	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0127770_17	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0127770_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0127770_19	PHROG	phrog_17977	NA	unknown function
UHGV-0127770_19	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0127770_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0127770_20	PHROG	phrog_17405	head protein	head and packaging
UHGV-0127770_20	Structural annotation	PF11367	NA	NA
UHGV-0127770_21	PHROG	phrog_885	major tail protein	tail
UHGV-0127770_21	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0127770_21	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0127770_21	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0127770_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0127770_23	UniRef90	UniRef90_A0A1B1IM37	Putative tape measure protein	NA
UHGV-0127770_23	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0127770_23	COG	COG5412	Phage-related protein	NA
UHGV-0127770_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127770_24	UniRef90	UniRef90_UPI00076AB659	HNH endonuclease	NA
UHGV-0127770_24	eggNOG-mapper	1589270.A0A0B5A545_9CAUD	HNH endonuclease	NA
UHGV-0127770_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0127770_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0127770_25	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0127770_25	UniRef90	UniRef90_A0A1C6EH41	Phage-related protein	NA
UHGV-0127770_25	eggNOG-mapper	1408437.JNJN01000050_gene1042	Phage tail tape measure protein, TP901 family	NA
UHGV-0127770_25	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0127770_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0127770_26	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0127770_26	eggNOG-mapper	742723.HMPREF9477_00896	NA	NA
UHGV-0127770_26	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0127770_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0127770_27	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0127770_27	eggNOG-mapper	742723.HMPREF9477_00895	NA	NA
UHGV-0127770_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0127770_27	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0127770_28	PHROG	phrog_9994	NA	unknown function
UHGV-0127770_28	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-0127770_28	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0127770_28	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0127770_28	Structural annotation	PF20747, PF09458, NF012201	NA	NA
UHGV-0127770_30	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0127770_30	Structural annotation	PF16990, NF033147, COG4935	NA	NA
UHGV-0127770_31	PHROG	phrog_17147	NA	unknown function
UHGV-0127770_31	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0127770_31	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0127770_31	Structural annotation	PF16323	NA	NA
UHGV-0127770_32	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0127770_33	eggNOG-mapper	33035.JPJF01000043_gene999	NA	NA
UHGV-0127770_34	PHROG	phrog_1382	NA	unknown function
UHGV-0127770_34	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-0127770_36	PHROG	phrog_1863	NA	unknown function
UHGV-0127770_36	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0127770_36	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0127770_37	PHROG	phrog_443	holin	lysis
UHGV-0127770_37	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0127770_37	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0127770_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0127770_37	Structural annotation	PF16945	NA	NA
UHGV-0127770_38	UniRef90	UniRef90_UPI001D091A6B	peptidoglycan-binding protein	NA
UHGV-0127770_38	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0127770_38	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0127770_38	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0127770_38	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0127770_38	Structural annotation	PF03412, PF01471, COG3271	NA	NA
UHGV-0127770_40	PHROG	phrog_3754	NA	unknown function
UHGV-0127770_40	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0127770_41	PHROG	phrog_21718	NA	unknown function
UHGV-0127770_41	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0127770_41	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0127770_42	PHROG	phrog_22984	NA	unknown function
UHGV-0127770_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127770_43	UniRef90	UniRef90_L0P6F5	HNH endonuclease	NA
UHGV-0127770_43	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0127770_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0127770_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0127770_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0127770_43	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0127770_44	PHROG	phrog_16490	NA	unknown function
UHGV-0127770_44	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0127770_45	PHROG	phrog_20016	NA	unknown function
UHGV-0127770_45	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0127770_45	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0127770_45	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0127770_46	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0127770_46	Structural annotation	PF12510	NA	NA
UHGV-0127770_47	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0127770_50	PHROG	phrog_2329	NA	unknown function
UHGV-0127770_50	UniRef90	UniRef90_A0A3R6DLU7	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0127770_50	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0127770_50	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0127770_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0127770_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0127770_52	UniRef90	UniRef90_A0A1C6CR25	Recombinase	NA
UHGV-0127770_52	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0127770_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0127770_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0127770_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0127770_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0127770_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0127770_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0127770_54	UniRef90	UniRef90_A0A810PZN0	HTH cro/C1-type domain-containing protein	NA
UHGV-0127770_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127770_54	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0127770_56	PHROG	phrog_806	NA	unknown function
UHGV-0127770_56	UniRef90	UniRef90_B0NCR2	NA	NA
UHGV-0127770_56	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0127770_56	Pfam	PF16729	NA	DUF5067
UHGV-0127770_56	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0127770_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0127770_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0127770_57	UniRef90	UniRef90_A0A6L6L9S1	Helix-turn-helix domain-containing protein	NA
UHGV-0127770_57	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0127770_57	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0127770_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0127770_57	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0127770_60	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0127770_60	eggNOG-mapper	1507.HMPREF0262_00305	sequence-specific DNA binding	NA
UHGV-0127770_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127770_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0127770_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0127770_61	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0127770_61	UniRef90	UniRef90_A0A844E191	Phage antirepressor Ant	NA
UHGV-0127770_61	eggNOG-mapper	1582156.A0A0A8WIG2_9CAUD	DNA binding	NA
UHGV-0127770_61	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0127770_61	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0127770_61	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0127770_66	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127770_66	UniRef90	UniRef90_A0A415L5E5	Endonuclease	NA
UHGV-0127770_66	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0127770_66	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0127770_66	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0127770_66	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0127770_66	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0127770_67	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0127770_67	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127770_67	UniRef90	UniRef90_A0A415L5D0	Recombinase RecT	NA
UHGV-0127770_67	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0127770_67	Pfam	PF03837	RecT family	RecT
UHGV-0127770_67	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0127770_67	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0127770_67	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0127770_68	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0127770_68	PHROG	phrog_4433	NA	unknown function
UHGV-0127770_68	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0127770_68	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0127770_68	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA