UHGV-0127803

Genome information

Genome length 38,566 bps

CDS count 66

Completeness 92.81% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127803
vOTU ID	vOTU-063034
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324489
BioSample	SAMN00792107
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.1
Jumbo phage	No

Genome content
Genome length	38,566 bps
GC content	42.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	94.44%
Average CDS length	554.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127803_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0127803_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0127803_2	UniRef90	UniRef90_B7AR71	HTH cro/C1-type domain-containing protein	NA
UHGV-0127803_2	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0127803_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0127803_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0127803_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0127803_2	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0127803_3	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0127803_3	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0127803_3	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0127803_8	Structural annotation	MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0127803_9	eggNOG-mapper	397290.C810_05159	NA	NA
UHGV-0127803_10	PHROG	phrog_30234	NA	unknown function
UHGV-0127803_10	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0127803_11	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127803_11	UniRef90	UniRef90_UPI000E49F6EC	NA	NA
UHGV-0127803_11	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0127803_11	Pfam	PF06378	NA	DUF1071
UHGV-0127803_11	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0127803_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0127803_12	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0127803_12	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0127803_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0127803_13	PHROG	phrog_7566	NA	unknown function
UHGV-0127803_13	UniRef90	UniRef90_A0A3D0HNX4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0127803_13	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0127803_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0127803_14	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0127803_14	UniRef90	UniRef90_UPI0018F5FF03	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0127803_14	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0127803_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0127803_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0127803_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0127803_16	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0127803_16	UniRef90	UniRef90_A0A316M6Z3	NA	NA
UHGV-0127803_16	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0127803_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0127803_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0127803_16	Structural annotation	PF14297	NA	NA
UHGV-0127803_17	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127803_17	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0127803_17	Structural annotation	PF13613, NF040595, COG2771	NA	NA
UHGV-0127803_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0127803_18	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0127803_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0127803_18	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0127803_19	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0127803_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0127803_19	UniRef90	UniRef90_A0A316MA86	DNA methylase N-4	NA
UHGV-0127803_19	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0127803_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0127803_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0127803_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0127803_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0127803_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0127803_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0127803_20	UniRef90	UniRef90_A0A3R6DF97	Cytosine-specific methyltransferase	NA
UHGV-0127803_20	eggNOG-mapper	397290.C810_00394	C-5 cytosine-specific DNA methylase	NA
UHGV-0127803_20	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0127803_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0127803_20	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0127803_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0127803_20	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0127803_23	PHROG	phrog_874	NA	unknown function
UHGV-0127803_23	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0127803_23	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0127803_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0127803_25	UniRef90	UniRef90_A0A412FGX2	OrfB_Zn_ribbon domain-containing protein	NA
UHGV-0127803_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0127803_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0127803_28	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0127803_28	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-0127803_28	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0127803_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0127803_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0127803_28	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0127803_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0127803_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0127803_32	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0127803_32	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0127803_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0127803_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0127803_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0127803_32	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0127803_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127803_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0127803_33	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0127803_33	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0127803_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0127803_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0127803_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127803_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0127803_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0127803_34	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0127803_34	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0127803_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0127803_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0127803_35	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0127803_35	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0127803_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0127803_35	COG	COG2369	NA	NA
UHGV-0127803_35	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0127803_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0127803_37	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0127803_37	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0127803_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0127803_37	Structural annotation	PF06810	NA	NA
UHGV-0127803_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0127803_38	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0127803_38	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0127803_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0127803_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0127803_41	PHROG	phrog_28328	NA	unknown function
UHGV-0127803_41	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0127803_42	PHROG	phrog_3366	NA	unknown function
UHGV-0127803_42	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0127803_42	Pfam	PF20536	NA	DUF6751
UHGV-0127803_42	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0127803_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0127803_43	UniRef90	UniRef90_A0A845R6E5	Capsid protein	NA
UHGV-0127803_43	eggNOG-mapper	1395513.P343_12640	Minor capsid protein	NA
UHGV-0127803_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0127803_43	Structural annotation	PF11114	NA	NA
UHGV-0127803_44	PHROG	phrog_3266	tail completion	connector
UHGV-0127803_44	Structural annotation	PF12691	NA	NA
UHGV-0127803_45	PHROG	phrog_3099	NA	unknown function
UHGV-0127803_45	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0127803_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0127803_46	UniRef90	UniRef90_A0A6L5YI08	RNA polymerase subunit sigma	NA
UHGV-0127803_46	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0127803_46	Structural annotation	PF10666	NA	NA
UHGV-0127803_47	PHROG	phrog_706	NA	unknown function
UHGV-0127803_47	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-0127803_47	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0127803_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0127803_47	Structural annotation	PF06854	NA	NA
UHGV-0127803_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0127803_48	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0127803_48	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0127803_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127803_49	PHROG	phrog_1194	NA	unknown function
UHGV-0127803_49	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0127803_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0127803_50	PHROG	phrog_13879	NA	unknown function
UHGV-0127803_50	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0127803_50	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0127803_52	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0127803_52	PHROG	phrog_11157	NA	unknown function
UHGV-0127803_52	UniRef90	UniRef90_A0A3E3HWI5	Big_13 domain-containing protein	NA
UHGV-0127803_52	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0127803_52	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0127803_52	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0127803_52	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0127803_53	PHROG	phrog_18725	NA	unknown function
UHGV-0127803_53	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0127803_53	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0127803_54	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0127803_57	PHROG	phrog_134	NA	unknown function
UHGV-0127803_57	UniRef90	UniRef90_A0A4R1QUT2	XkdX-like protein	NA
UHGV-0127803_57	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0127803_57	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0127803_57	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0127803_58	PHROG	phrog_4105	NA	unknown function
UHGV-0127803_58	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0127803_60	PHROG	phrog_34925	NA	unknown function
UHGV-0127803_60	UniRef90	UniRef90_A0A7X5C663	Aminopeptidase	NA
UHGV-0127803_60	eggNOG-mapper	411459.RUMOBE_01083	NA	NA
UHGV-0127803_60	Structural annotation	PF06946	NA	NA
UHGV-0127803_63	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0127803_63	PHROG	phrog_3513	endolysin	lysis
UHGV-0127803_63	UniRef90	UniRef90_R7N6M9	LYZ2 domain-containing protein	NA
UHGV-0127803_63	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-0127803_63	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0127803_63	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0127803_63	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0127803_63	Structural annotation	PF01471, PF01832, NF038016, COG1705, COG3409	NA	NA