UHGV-0127878

Genome information

Genome length 57,159 bps

CDS count 68

Completeness 77.71% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127878
vOTU ID	vOTU-016731
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313744
BioSample	SAMEA4370583
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.94
Jumbo phage	No

Genome content
Genome length	57,159 bps
GC content	44.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.82%
Average CDS length	783.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127878_3	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-0127878_3	PHROG	phrog_10276	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-0127878_3	UniRef90	UniRef90_UPI001032F03F	JAB domain-containing protein	NA
UHGV-0127878_3	eggNOG-mapper	1121889.AUDM01000004_gene2523	DNA repair protein	NA
UHGV-0127878_3	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-0127878_3	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0127878_3	Structural annotation	PF04002, MF_00018, TIGR00608, COG2003	NA	NA
UHGV-0127878_4	PHROG	phrog_17696	NA	unknown function
UHGV-0127878_4	eggNOG-mapper	742727.HMPREF9447_04814	NA	NA
UHGV-0127878_5	eggNOG-mapper	742727.HMPREF9447_04814	NA	NA
UHGV-0127878_7	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0127878_7	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0127878_7	UniRef90	UniRef90_UPI0004948236	phage/plasmid primase, P4 family	NA
UHGV-0127878_7	eggNOG-mapper	1121100.JCM6294_593	Phage plasmid primase, P4 family domain protein	NA
UHGV-0127878_7	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0127878_7	Pfam	PF19263	NA	DUF5906
UHGV-0127878_7	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0127878_7	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0127878_7	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0127878_8	eggNOG-mapper	742727.HMPREF9447_04823	NA	NA
UHGV-0127878_9	KOfam	K06926	NA	NA
UHGV-0127878_9	PHROG	phrog_38223	NA	unknown function
UHGV-0127878_9	UniRef90	UniRef90_A0A3E5A880	ATP-binding protein	NA
UHGV-0127878_9	eggNOG-mapper	679935.Alfi_0733	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-0127878_9	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-0127878_9	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0127878_9	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0127878_9	Structural annotation	PF13304, MF_00365, NF041760, COG1195	NA	NA
UHGV-0127878_10	PHROG	phrog_34356	NA	unknown function
UHGV-0127878_10	UniRef90	UniRef90_F3PN70	Conserved domain protein	NA
UHGV-0127878_10	eggNOG-mapper	679935.Alfi_0734	NA	NA
UHGV-0127878_10	Structural annotation	PF13707	NA	NA
UHGV-0127878_11	UniRef90	UniRef90_A0A7C6NMH2	NA	NA
UHGV-0127878_11	eggNOG-mapper	537011.PREVCOP_04978	NA	NA
UHGV-0127878_11	Pfam	PF13711	NA	DUF4160
UHGV-0127878_11	Structural annotation	PF13711	NA	NA
UHGV-0127878_12	UniRef90	UniRef90_R5CE05	PF10387 family protein	NA
UHGV-0127878_12	eggNOG-mapper	563031.HMPREF0666_02551	NA	NA
UHGV-0127878_12	Pfam	PF10387	NA	DUF2442
UHGV-0127878_12	Structural annotation	PF10387, PF13560, NF041951, COG3655	NA	NA
UHGV-0127878_13	UniRef90	UniRef90_UPI00100AA80A	SHOCT domain-containing protein	NA
UHGV-0127878_14	Structural annotation	PF03592	NA	NA
UHGV-0127878_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127878_15	UniRef90	UniRef90_UPI000493C5C9	phage portal protein	NA
UHGV-0127878_15	eggNOG-mapper	457424.BFAG_02417	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127878_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127878_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0127878_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0127878_16	UniRef90	UniRef90_UPI001E424B95	terminase family protein	NA
UHGV-0127878_16	eggNOG-mapper	742727.HMPREF9447_04827	Terminase-like family	NA
UHGV-0127878_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0127878_16	COG	COG5362	Phage terminase large subunit	NA
UHGV-0127878_16	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0127878_17	eggNOG-mapper	742727.HMPREF9447_04829	NA	NA
UHGV-0127878_18	UniRef90	UniRef90_J9C707	Protein containing Carbohydrate-binding family V/XII domain protein	NA
UHGV-0127878_18	Structural annotation	PF21430	NA	NA
UHGV-0127878_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-0127878_19	UniRef90	UniRef90_A0A6G0G3G1	Major capsid protein E	NA
UHGV-0127878_19	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0127878_20	UniRef90	UniRef90_A0A2V3PKY2	Flg_new_2 domain-containing protein	NA
UHGV-0127878_20	eggNOG-mapper	1121100.JCM6294_578	NA	NA
UHGV-0127878_20	Structural annotation	PF20449	NA	NA
UHGV-0127878_21	eggNOG-mapper	1121100.JCM6294_577	NA	NA
UHGV-0127878_21	Structural annotation	PF19586	NA	NA
UHGV-0127878_22	PHROG	phrog_5377	NA	unknown function
UHGV-0127878_23	eggNOG-mapper	1121100.JCM6294_575	NA	NA
UHGV-0127878_23	Structural annotation	PF06141	NA	NA
UHGV-0127878_24	eggNOG-mapper	1121100.JCM6294_574	NA	NA
UHGV-0127878_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0127878_25	eggNOG-mapper	1121100.JCM6294_573	NA	NA
UHGV-0127878_27	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0127878_27	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0127878_27	UniRef90	UniRef90_UPI0012DED46F	tape measure protein	NA
UHGV-0127878_27	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-0127878_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0127878_27	COG	COG1511	NA	NA
UHGV-0127878_28	PHROG	phrog_10156	NA	unknown function
UHGV-0127878_28	eggNOG-mapper	457424.BFAG_02434	NA	NA
UHGV-0127878_29	eggNOG-mapper	742727.HMPREF9447_04845	NA	NA
UHGV-0127878_29	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0127878_30	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0127878_30	PHROG	phrog_38044	NA	unknown function
UHGV-0127878_30	UniRef90	UniRef90_A0A6N3ESA8	Chromosome partition protein Smc	NA
UHGV-0127878_30	eggNOG-mapper	762968.HMPREF9441_00566	cellulase activity	NA
UHGV-0127878_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0127878_30	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0127878_31	PHROG	phrog_29137	NA	unknown function
UHGV-0127878_31	UniRef90	UniRef90_F3QSN2	Conserved domain protein	NA
UHGV-0127878_32	PHROG	phrog_20732	NA	unknown function
UHGV-0127878_32	UniRef90	UniRef90_UPI0019142871	phage holin family protein	NA
UHGV-0127878_32	eggNOG-mapper	762968.HMPREF9441_00564	NA	NA
UHGV-0127878_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0127878_33	PHROG	phrog_28004	NA	unknown function
UHGV-0127878_33	UniRef90	UniRef90_F3QSN4	Conserved domain protein	NA
UHGV-0127878_33	eggNOG-mapper	762968.HMPREF9441_00563	NA	NA
UHGV-0127878_33	Structural annotation	PF01105, NF038393	NA	NA
UHGV-0127878_34	PHROG	phrog_36764	NA	unknown function
UHGV-0127878_34	UniRef90	UniRef90_F3QSN5	Conserved domain protein	NA
UHGV-0127878_36	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0127878_36	PHROG	phrog_7	endolysin	lysis
UHGV-0127878_36	UniRef90	UniRef90_G5SMI5	Lysozyme	NA
UHGV-0127878_36	eggNOG-mapper	762968.HMPREF9441_00560	lysozyme	NA
UHGV-0127878_36	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0127878_36	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0127878_36	HAMAP	MF_04110	Endolysin	NA
UHGV-0127878_36	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0127878_37	PHROG	phrog_1281	NA	unknown function
UHGV-0127878_37	UniRef90	UniRef90_UPI001032D731	NA	NA
UHGV-0127878_37	eggNOG-mapper	619693.HMPREF6745_0799	NA	NA
UHGV-0127878_37	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0127878_37	COG	COG3600	NA	NA
UHGV-0127878_37	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0127878_38	eggNOG-mapper	619693.HMPREF6745_0798	NA	NA
UHGV-0127878_39	eggNOG-mapper	762982.HMPREF9442_01199	NA	NA
UHGV-0127878_40	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0127878_40	eggNOG-mapper	762968.HMPREF9441_00556	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0127878_40	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0127878_41	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0127878_42	UniRef90	UniRef90_A0A7M1RY91	Nuclear pore complex-like protein	NA
UHGV-0127878_44	PHROG	phrog_38368	NA	unknown function
UHGV-0127878_44	eggNOG-mapper	762968.HMPREF9441_00548	NA	NA
UHGV-0127878_44	Structural annotation	NF004687	NA	NA
UHGV-0127878_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0127878_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0127878_47	UniRef90	UniRef90_A0A6L6MRS4	AAA family ATPase	NA
UHGV-0127878_47	eggNOG-mapper	436308.Nmar_1214	COG1192 ATPases involved in chromosome partitioning	NA
UHGV-0127878_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-0127878_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0127878_47	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0127878_49	PHROG	phrog_35741	NA	unknown function
UHGV-0127878_49	eggNOG-mapper	762968.HMPREF9441_00544	NA	NA
UHGV-0127878_50	PHROG	phrog_8684	NA	unknown function
UHGV-0127878_50	UniRef90	UniRef90_J9G1C4	Protein containing YopX domain protein	NA
UHGV-0127878_50	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0127878_50	Pfam	PF09643	YopX protein	YopX
UHGV-0127878_50	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0127878_51	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0127878_52	PHROG	phrog_874	NA	unknown function
UHGV-0127878_52	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0127878_52	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0127878_53	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0127878_53	UniRef90	UniRef90_F3QSQ5	Conserved domain protein	NA
UHGV-0127878_53	eggNOG-mapper	762982.HMPREF9442_01215	NA	NA
UHGV-0127878_53	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0127878_55	PHROG	phrog_32914	NA	unknown function
UHGV-0127878_56	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0127878_56	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0127878_57	PHROG	phrog_13941	NA	unknown function
UHGV-0127878_57	eggNOG-mapper	1235788.C802_00082	NA	NA
UHGV-0127878_58	PHROG	phrog_12005	NA	unknown function
UHGV-0127878_59	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0127878_59	UniRef90	UniRef90_UPI000E4781A9	radical SAM protein	NA
UHGV-0127878_59	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0127878_59	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0127878_59	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-0127878_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0127878_60	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0127878_60	UniRef90	UniRef90_A0A6N3EY17	Methyltransferase	NA
UHGV-0127878_60	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0127878_60	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0127878_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0127878_60	COG	COG0863	DNA modification methylase	NA
UHGV-0127878_60	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0127878_61	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0127878_61	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0127878_61	UniRef90	UniRef90_UPI001032D105	DNA cytosine methyltransferase	NA
UHGV-0127878_61	eggNOG-mapper	762982.HMPREF9442_01223	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0127878_61	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0127878_61	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0127878_61	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0127878_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0127878_61	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0127878_62	UniRef90	UniRef90_F3QQU2	Conserved domain protein	NA
UHGV-0127878_63	PHROG	phrog_19578	NA	unknown function
UHGV-0127878_63	eggNOG-mapper	762968.HMPREF9441_00536	NA	NA
UHGV-0127878_63	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-0127878_64	PHROG	phrog_35728	NA	unknown function
UHGV-0127878_64	UniRef90	UniRef90_F3QQU4	Conserved domain protein	NA
UHGV-0127878_64	eggNOG-mapper	762982.HMPREF9442_00537	NA	NA
UHGV-0127878_64	Pfam	PF20338	NA	DUF6633
UHGV-0127878_64	Structural annotation	PF20338	NA	NA
UHGV-0127878_65	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0127878_65	UniRef90	UniRef90_A0A6N3EVN5	NA	NA
UHGV-0127878_65	eggNOG-mapper	357276.EL88_11475	NA	NA
UHGV-0127878_65	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0127878_65	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0127878_65	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0127878_66	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0127878_66	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127878_66	UniRef90	UniRef90_A0A6N3ES59	HNH endonuclease	NA
UHGV-0127878_66	eggNOG-mapper	357276.EL88_08545	HNH endonuclease	NA
UHGV-0127878_66	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0127878_66	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0127878_67	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0127878_67	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0127878_67	UniRef90	UniRef90_G5SMF7	Helicase protein	NA
UHGV-0127878_67	eggNOG-mapper	762968.HMPREF9441_00532	Helicase C-terminal domain protein	NA
UHGV-0127878_67	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0127878_67	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0127878_67	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0127878_67	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0127878_67	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0127878_68	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127878_68	UniRef90	UniRef90_UPI0006BD7A04	recombination protein NinG	NA
UHGV-0127878_68	eggNOG-mapper	762968.HMPREF9441_03237	NA	NA
UHGV-0127878_68	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0127878_68	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0127878_68	Structural annotation	PF05766	NA	NA