UHGV-0127950

Genome information

Genome length 37,129 bps

CDS count 62

Completeness 91.08% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127950
vOTU ID	vOTU-060874
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_310820
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.63
Jumbo phage	No

Genome content
Genome length	37,129 bps
GC content	42.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.80%
Average CDS length	565.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127950_1	PHROG	phrog_4433	NA	unknown function
UHGV-0127950_1	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0127950_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0127950_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0127950_3	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0127950_4	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0127950_4	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0127950_4	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0127950_4	Pfam	PF06378	NA	DUF1071
UHGV-0127950_4	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0127950_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0127950_5	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0127950_5	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0127950_6	PHROG	phrog_7566	NA	unknown function
UHGV-0127950_6	UniRef90	UniRef90_A0A3B9CDC4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0127950_6	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0127950_7	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0127950_8	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0127950_8	UniRef90	UniRef90_A0A316M6Z3	NA	NA
UHGV-0127950_8	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0127950_8	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0127950_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0127950_8	Structural annotation	PF14297	NA	NA
UHGV-0127950_9	PHROG	phrog_19106	NA	unknown function
UHGV-0127950_9	UniRef90	UniRef90_A0A6L5YG76	GIY-YIG nuclease family protein	NA
UHGV-0127950_9	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0127950_9	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0127950_9	Structural annotation	TIGR01453	NA	NA
UHGV-0127950_13	PHROG	phrog_38832	NA	unknown function
UHGV-0127950_13	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0127950_13	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0127950_14	UniRef90	UniRef90_UPI001D064D4E	NA	NA
UHGV-0127950_14	Pfam	PF04448	NA	DUF551
UHGV-0127950_14	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0127950_15	PHROG	phrog_8684	NA	unknown function
UHGV-0127950_15	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0127950_15	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0127950_15	Pfam	PF09643	YopX protein	YopX
UHGV-0127950_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0127950_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0127950_16	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0127950_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0127950_16	UniRef90	UniRef90_A0A3A6JBK8	Restriction alleviation protein, Lar family	NA
UHGV-0127950_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0127950_16	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0127950_16	Structural annotation	PF14354, TIGR03655, TIGR02501	NA	NA
UHGV-0127950_17	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0127950_17	UniRef90	UniRef90_A0A352SFW0	HNH endonuclease	NA
UHGV-0127950_17	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0127950_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0127950_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0127950_17	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0127950_18	PHROG	phrog_874	NA	unknown function
UHGV-0127950_18	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0127950_18	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0127950_19	PHROG	phrog_1578	NA	unknown function
UHGV-0127950_19	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-0127950_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0127950_21	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0127950_21	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0127950_21	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0127950_21	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0127950_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0127950_21	COG	COG0863	DNA modification methylase	NA
UHGV-0127950_21	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0127950_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0127950_22	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0127950_22	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-0127950_22	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0127950_22	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0127950_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0127950_22	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0127950_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0127950_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0127950_23	UniRef90	UniRef90_UPI001C035897	DNA cytosine methyltransferase	NA
UHGV-0127950_23	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0127950_23	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0127950_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0127950_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0127950_23	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0127950_24	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0127950_24	PHROG	phrog_3502	NA	unknown function
UHGV-0127950_24	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-0127950_24	eggNOG-mapper	1232430.CAVG010000083_gene769	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0127950_24	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0127950_24	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0127950_27	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0127950_28	eggNOG-mapper	1095750.HMPREF9970_0178	NA	NA
UHGV-0127950_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0127950_31	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0127950_31	UniRef90	UniRef90_UPI00190E9E57	NA	NA
UHGV-0127950_31	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0127950_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0127950_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0127950_31	Pfam	PF14386	NA	DUF4417
UHGV-0127950_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0127950_31	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0127950_32	PHROG	phrog_2579	ParB C-terminal domain	DNA, RNA and nucleotide metabolism
UHGV-0127950_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0127950_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0127950_34	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0127950_34	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0127950_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0127950_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0127950_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0127950_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0127950_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0127950_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0127950_35	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-0127950_35	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0127950_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0127950_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0127950_36	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-0127950_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0127950_36	Structural annotation	PF11114	NA	NA
UHGV-0127950_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0127950_37	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0127950_37	eggNOG-mapper	1235790.C805_00050	Phage minor capsid protein 2	NA
UHGV-0127950_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0127950_37	COG	COG2369	NA	NA
UHGV-0127950_37	Structural annotation	PF06152	NA	NA
UHGV-0127950_38	PHROG	phrog_3754	NA	unknown function
UHGV-0127950_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0127950_39	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0127950_39	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0127950_40	UniRef90	UniRef90_A0A6N2TVE6	HTH_11 domain-containing protein	NA
UHGV-0127950_40	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0127950_40	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0127950_42	PHROG	phrog_21718	NA	unknown function
UHGV-0127950_42	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0127950_43	PHROG	phrog_22984	NA	unknown function
UHGV-0127950_44	PHROG	phrog_16490	NA	unknown function
UHGV-0127950_44	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0127950_46	PHROG	phrog_28802	NA	unknown function
UHGV-0127950_46	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0127950_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0127950_47	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0127950_47	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0127950_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0127950_47	Structural annotation	PF06810	NA	NA
UHGV-0127950_48	PHROG	phrog_544	major head protein	head and packaging
UHGV-0127950_48	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0127950_48	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0127950_48	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0127950_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0127950_49	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0127950_50	PHROG	phrog_18218	NA	unknown function
UHGV-0127950_50	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-0127950_50	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0127950_50	Structural annotation	PF06946	NA	NA
UHGV-0127950_51	PHROG	phrog_3366	NA	unknown function
UHGV-0127950_51	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0127950_51	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0127950_52	PHROG	phrog_3266	tail completion	connector
UHGV-0127950_52	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0127950_52	Structural annotation	PF12691	NA	NA
UHGV-0127950_53	PHROG	phrog_3099	NA	unknown function
UHGV-0127950_53	UniRef90	UniRef90_A0A7M3SAI1	S-l_SbsC_C domain-containing protein	NA
UHGV-0127950_53	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0127950_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0127950_54	PHROG	phrog_11299	NA	unknown function
UHGV-0127950_54	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0127950_54	Structural annotation	PF10666	NA	NA
UHGV-0127950_55	PHROG	phrog_706	NA	unknown function
UHGV-0127950_55	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0127950_55	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0127950_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0127950_55	Structural annotation	PF06854	NA	NA
UHGV-0127950_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0127950_56	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0127950_56	COG	COG5412	Phage-related protein	NA
UHGV-0127950_57	PHROG	phrog_1194	NA	unknown function
UHGV-0127950_57	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0127950_57	Pfam	PF20458	NA	DUF6711
UHGV-0127950_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0127950_58	PHROG	phrog_18190	NA	unknown function
UHGV-0127950_58	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0127950_58	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0127950_58	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0127950_60	PHROG	phrog_17196	kinase	other
UHGV-0127950_60	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0127950_60	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0127950_60	Structural annotation	PF13619	NA	NA
UHGV-0127950_62	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0127950_62	PHROG	phrog_2649	endolysin	lysis
UHGV-0127950_62	UniRef90	UniRef90_R6C8U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0127950_62	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0127950_62	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0127950_62	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127950_62	Structural annotation	COG3409	NA	NA