UHGV-0127985

Genome information

Genome length 28,099 bps

CDS count 47

Completeness 72.48% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0127985
vOTU ID	vOTU-032396
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323021
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.33
Jumbo phage	No

Genome content
Genome length	28,099 bps
GC content	38.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.22%
Average CDS length	559.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0127985_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0127985_1	PHROG	phrog_998	endolysin	lysis
UHGV-0127985_1	UniRef90	UniRef90_A0A8G1TBC1	Phage holin	NA
UHGV-0127985_1	eggNOG-mapper	272623.L15795	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0127985_1	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0127985_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127985_1	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0127985_2	PHROG	phrog_199	holin	lysis
UHGV-0127985_2	UniRef90	UniRef90_R2NYI3	Toxin secretion/phage lysis holin	NA
UHGV-0127985_2	eggNOG-mapper	1158602.I590_02584	Bacteriophage holin family	NA
UHGV-0127985_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0127985_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0127985_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0127985_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0127985_3	PHROG	phrog_1382	NA	unknown function
UHGV-0127985_3	eggNOG-mapper	742740.HMPREF9474_02334	NA	NA
UHGV-0127985_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0127985_3	Structural annotation	NF040910	NA	NA
UHGV-0127985_4	PHROG	phrog_1382	NA	unknown function
UHGV-0127985_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0127985_5	PHROG	phrog_11382	NA	unknown function
UHGV-0127985_5	eggNOG-mapper	1158614.I592_02320	NA	NA
UHGV-0127985_6	eggNOG-mapper	1158614.I592_02321	NA	NA
UHGV-0127985_7	PHROG	phrog_35525	NA	unknown function
UHGV-0127985_7	UniRef90	UniRef90_R2P1E8	Fibronectin type-III domain-containing protein	NA
UHGV-0127985_7	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0127985_7	COG	COG5492	NA	NA
UHGV-0127985_8	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0127985_8	PHROG	phrog_341	major tail protein	tail
UHGV-0127985_8	UniRef90	UniRef90_UPI001367AB6A	Ig-like domain-containing protein	NA
UHGV-0127985_8	eggNOG-mapper	1158602.I590_02579	Bacterial Ig-like domain 2	NA
UHGV-0127985_8	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0127985_8	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0127985_8	COG	COG5492	NA	NA
UHGV-0127985_8	Structural annotation	PF02368, PF07495, MF_04116, COG5492	NA	NA
UHGV-0127985_9	PHROG	phrog_8913	minor head protein	head and packaging
UHGV-0127985_9	UniRef90	UniRef90_A0A1L8WTQ1	BppU_IgG domain-containing protein	NA
UHGV-0127985_9	eggNOG-mapper	1158602.I590_02578	NA	NA
UHGV-0127985_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0127985_9	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0127985_9	Structural annotation	PF10651, PF18667, NF040788, COG5513	NA	NA
UHGV-0127985_10	PHROG	phrog_11857	NA	unknown function
UHGV-0127985_10	UniRef90	UniRef90_UPI001369F4F3	CHAP domain-containing protein	NA
UHGV-0127985_10	eggNOG-mapper	1158602.I590_02577	Phage minor structural protein	NA
UHGV-0127985_10	COG	COG4926	Phage-related protein	NA
UHGV-0127985_10	Structural annotation	COG3942	NA	NA
UHGV-0127985_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0127985_11	UniRef90	UniRef90_R2VI60	Phage minor structural protein	NA
UHGV-0127985_11	eggNOG-mapper	1158614.I592_02417	Prophage endopeptidase tail	NA
UHGV-0127985_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0127985_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0127985_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0127985_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0127985_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0127985_11	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0127985_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0127985_12	UniRef90	UniRef90_UPI001E4D5F6F	phage tail protein	NA
UHGV-0127985_12	eggNOG-mapper	1158614.I592_02418	tail component	NA
UHGV-0127985_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0127985_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0127985_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0127985_13	UniRef90	UniRef90_A0A7H4KLM2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0127985_13	eggNOG-mapper	1158614.I592_02419	Phage tail tape measure protein, TP901 family	NA
UHGV-0127985_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0127985_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0127985_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0127985_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0127985_14	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0127985_14	eggNOG-mapper	1158614.I592_02420	NA	NA
UHGV-0127985_15	PHROG	phrog_88	major tail protein	tail
UHGV-0127985_15	UniRef90	UniRef90_R2Y4S4	Phi13 family phage major tail protein	NA
UHGV-0127985_15	eggNOG-mapper	1158614.I592_02421	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0127985_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0127985_15	COG	COG5492	NA	NA
UHGV-0127985_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0127985_16	PHROG	phrog_525	NA	unknown function
UHGV-0127985_16	eggNOG-mapper	1158614.I592_02422	NA	NA
UHGV-0127985_16	Pfam	PF20765	NA	DUF6838
UHGV-0127985_16	Structural annotation	PF20765	NA	NA
UHGV-0127985_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0127985_17	UniRef90	UniRef90_UPI0018832E9E	HK97 gp10 family phage protein	NA
UHGV-0127985_17	eggNOG-mapper	1158614.I592_02423	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0127985_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0127985_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0127985_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0127985_18	UniRef90	UniRef90_R3KCN7	50S ribosomal protein L23	NA
UHGV-0127985_18	eggNOG-mapper	1158614.I592_02424	NA	NA
UHGV-0127985_18	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0127985_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0127985_19	eggNOG-mapper	1158614.I592_02425	NA	NA
UHGV-0127985_20	PHROG	phrog_8832	NA	unknown function
UHGV-0127985_20	eggNOG-mapper	1158614.I592_02426	NA	NA
UHGV-0127985_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0127985_21	UniRef90	UniRef90_UPI001E4D6682	NA	NA
UHGV-0127985_21	eggNOG-mapper	1158614.I592_02427	NA	NA
UHGV-0127985_21	Pfam	PF17236	NA	DUF5309
UHGV-0127985_21	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0127985_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0127985_22	UniRef90	UniRef90_A0A1Y3HWY1	NA	NA
UHGV-0127985_22	eggNOG-mapper	1158614.I592_02428	NA	NA
UHGV-0127985_22	Pfam	PF14265	NA	DUF4355
UHGV-0127985_22	Structural annotation	PF14265	NA	NA
UHGV-0127985_24	PHROG	phrog_5859	NA	unknown function
UHGV-0127985_24	eggNOG-mapper	1158614.I592_02430	NA	NA
UHGV-0127985_24	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0127985_25	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0127985_25	UniRef90	UniRef90_A0A7U8FBT1	Minor head protein	NA
UHGV-0127985_25	eggNOG-mapper	1158614.I592_02431	cell adhesion	NA
UHGV-0127985_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0127985_25	COG	COG2369	NA	NA
UHGV-0127985_25	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0127985_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0127985_26	UniRef90	UniRef90_R2VI47	SPP1 family phage portal protein	NA
UHGV-0127985_26	eggNOG-mapper	1158614.I592_02432	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0127985_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0127985_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0127985_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0127985_27	UniRef90	UniRef90_A0A1A7T4D4	Phage terminase large subunit	NA
UHGV-0127985_27	eggNOG-mapper	1158602.I590_00651	Terminase-like family	NA
UHGV-0127985_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0127985_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0127985_27	COG	COG5410	NA	NA
UHGV-0127985_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0127985_28	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0127985_28	UniRef90	UniRef90_UPI001A9B9757	phBC6A51 family helix-turn-helix protein	NA
UHGV-0127985_28	eggNOG-mapper	1158602.I590_00652	NA	NA
UHGV-0127985_29	PHROG	phrog_1202	NA	unknown function
UHGV-0127985_29	eggNOG-mapper	1158601.I585_01163	NA	NA
UHGV-0127985_29	Structural annotation	PF18789	NA	NA
UHGV-0127985_30	COG	COG1295	NA	NA
UHGV-0127985_31	PHROG	phrog_1558	NA	unknown function
UHGV-0127985_31	eggNOG-mapper	1158614.I592_01115	NA	NA
UHGV-0127985_31	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0127985_32	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0127985_32	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0127985_32	eggNOG-mapper	1140001.I571_01723	NA	NA
UHGV-0127985_32	Structural annotation	PF17399	NA	NA
UHGV-0127985_33	PHROG	phrog_98	NA	unknown function
UHGV-0127985_33	UniRef90	UniRef90_A0A7H4KVS4	YopX protein	NA
UHGV-0127985_33	eggNOG-mapper	768486.EHR_00715	YopX protein	NA
UHGV-0127985_33	Pfam	PF09643	YopX protein	YopX
UHGV-0127985_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0127985_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0127985_35	PHROG	phrog_9982	NA	unknown function
UHGV-0127985_36	PHROG	phrog_27394	NA	unknown function
UHGV-0127985_36	eggNOG-mapper	1140001.I571_01141	NA	NA
UHGV-0127985_37	PHROG	phrog_34095	NA	unknown function
UHGV-0127985_37	UniRef90	UniRef90_UPI0010F8F270	NA	NA
UHGV-0127985_37	eggNOG-mapper	1140002.I570_01452	NA	NA
UHGV-0127985_38	PHROG	phrog_3886	NA	unknown function
UHGV-0127985_38	eggNOG-mapper	1158614.I592_02447	NA	NA
UHGV-0127985_39	KOfam	K03744	lemA; LemA protein	NA
UHGV-0127985_39	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0127985_39	UniRef90	UniRef90_A0A4R6ZNV7	LemA protein	NA
UHGV-0127985_39	eggNOG-mapper	1158614.I592_02448	LemA family	NA
UHGV-0127985_39	Pfam	PF04011	LemA family	LemA
UHGV-0127985_39	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0127985_40	eggNOG-mapper	1158602.I590_02972	NA	NA
UHGV-0127985_41	PHROG	phrog_4960	NA	unknown function
UHGV-0127985_41	eggNOG-mapper	1158614.I592_01101	NA	NA
UHGV-0127985_41	Structural annotation	PF06004, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-0127985_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0127985_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0127985_43	UniRef90	UniRef90_S0KLW7	Cytosine-specific methyltransferase	NA
UHGV-0127985_43	eggNOG-mapper	1140002.I570_04032	C-5 cytosine-specific DNA methylase	NA
UHGV-0127985_43	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0127985_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0127985_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0127985_43	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0127985_44	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0127985_44	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0127985_44	UniRef90	UniRef90_UPI0015B64586	DNA cytosine methyltransferase	NA
UHGV-0127985_44	eggNOG-mapper	1140002.I570_04032	C-5 cytosine-specific DNA methylase	NA
UHGV-0127985_44	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0127985_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0127985_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0127985_46	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0127985_46	UniRef90	UniRef90_A0A7H4KPB3	MazG nucleotide pyrophosphohydrolase domain protein	NA
UHGV-0127985_46	eggNOG-mapper	1158602.I590_01675	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0127985_46	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0127985_46	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0127985_46	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0127985_47	PHROG	phrog_31371	NA	unknown function
UHGV-0127985_47	eggNOG-mapper	1140002.I570_01456	NA	NA