UHGV-0128006

Genome information

Genome length 41,467 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128006
vOTU ID	vOTU-059572
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313136
BioSample	SAMEA4384481
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.74
Jumbo phage	No

Genome content
Genome length	41,467 bps
GC content	52.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.80%
Average CDS length	567.86 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128006_1	UniRef90	UniRef90_A0A1T4XQT6	TraX protein	NA
UHGV-0128006_1	eggNOG-mapper	622312.ROSEINA2194_03263	NA	NA
UHGV-0128006_1	Pfam	PF05857	TraX protein	TraX
UHGV-0128006_1	Structural annotation	PF05857, MF_01949, NF010454	NA	NA
UHGV-0128006_3	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0128006_4	Structural annotation	PF12510	NA	NA
UHGV-0128006_5	PHROG	phrog_20016	NA	unknown function
UHGV-0128006_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0128006_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0128006_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0128006_6	PHROG	phrog_16490	NA	unknown function
UHGV-0128006_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0128006_7	PHROG	phrog_22984	NA	unknown function
UHGV-0128006_8	PHROG	phrog_21718	NA	unknown function
UHGV-0128006_8	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0128006_9	PHROG	phrog_3754	NA	unknown function
UHGV-0128006_9	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0128006_11	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0128006_11	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0128006_12	PHROG	phrog_1129	holin	lysis
UHGV-0128006_12	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0128006_12	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0128006_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0128006_12	Structural annotation	PF16079	NA	NA
UHGV-0128006_13	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0128006_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0128006_14	PHROG	phrog_291	endolysin	lysis
UHGV-0128006_14	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0128006_14	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0128006_14	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0128006_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0128006_14	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0128006_14	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0128006_15	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0128006_15	UniRef90	UniRef90_UPI0019223612	phage tail assembly chaperone	NA
UHGV-0128006_15	eggNOG-mapper	666685.R2APBS1_2865	Phage tail assembly chaperone protein	NA
UHGV-0128006_15	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0128006_15	Structural annotation	PF16778	NA	NA
UHGV-0128006_16	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0128006_16	PHROG	phrog_5302	tail protein	tail
UHGV-0128006_16	UniRef90	UniRef90_UPI00156EC4BD	phage tail protein	NA
UHGV-0128006_16	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0128006_16	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0128006_17	PHROG	phrog_13589	NA	unknown function
UHGV-0128006_17	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0128006_17	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0128006_18	PHROG	phrog_24267	NA	unknown function
UHGV-0128006_18	UniRef90	UniRef90_A0A7Y9PIW8	Microcystin-dependent protein	NA
UHGV-0128006_18	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0128006_18	COG	COG4675	Phage tail collar domain	NA
UHGV-0128006_18	Structural annotation	COG4675	NA	NA
UHGV-0128006_19	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0128006_19	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0128006_20	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0128006_20	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-0128006_20	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0128006_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128006_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0128006_20	COG	COG4926	Phage-related protein	NA
UHGV-0128006_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0128006_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128006_21	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0128006_21	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0128006_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0128006_22	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0128006_22	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0128006_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0128006_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128006_23	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0128006_23	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0128006_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0128006_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0128006_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0128006_24	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0128006_24	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-0128006_24	eggNOG-mapper	545697.HMPREF0216_02859	domain protein	NA
UHGV-0128006_24	COG	COG1511	NA	NA
UHGV-0128006_24	Structural annotation	PF20155	NA	NA
UHGV-0128006_26	PHROG	phrog_18646	NA	unknown function
UHGV-0128006_27	PHROG	phrog_885	major tail protein	tail
UHGV-0128006_27	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0128006_27	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0128006_27	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0128006_28	Structural annotation	PF11367	NA	NA
UHGV-0128006_29	PHROG	phrog_17977	NA	unknown function
UHGV-0128006_29	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0128006_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0128006_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0128006_31	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0128006_31	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0128006_31	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0128006_32	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0128006_32	Structural annotation	PF06810	NA	NA
UHGV-0128006_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0128006_33	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0128006_33	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0128006_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0128006_34	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0128006_34	eggNOG-mapper	1540257.JQMW01000009_gene3375	NA	NA
UHGV-0128006_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0128006_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0128006_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0128006_35	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0128006_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0128006_36	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0128006_36	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0128006_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0128006_36	COG	COG2369	NA	NA
UHGV-0128006_36	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0128006_38	PHROG	phrog_8680	NA	unknown function
UHGV-0128006_38	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0128006_38	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0128006_38	Pfam	PF14386	NA	DUF4417
UHGV-0128006_38	Structural annotation	PF14386	NA	NA
UHGV-0128006_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0128006_39	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0128006_39	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0128006_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0128006_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0128006_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128006_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128006_40	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0128006_40	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0128006_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128006_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128006_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128006_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128006_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128006_41	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0128006_41	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0128006_41	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0128006_41	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0128006_41	Structural annotation	PF16677	NA	NA
UHGV-0128006_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128006_43	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0128006_43	Pfam	PF07374	NA	DUF1492
UHGV-0128006_43	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0128006_43	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0128006_44	Pfam	PF04448	NA	DUF551
UHGV-0128006_44	Structural annotation	PF04448	NA	NA
UHGV-0128006_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0128006_46	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128006_46	UniRef90	UniRef90_A0A3G2R5K0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0128006_46	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0128006_46	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0128006_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0128006_46	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0128006_47	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0128006_47	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0128006_47	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0128006_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128006_47	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0128006_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0128006_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128006_49	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0128006_49	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0128006_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0128006_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0128006_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0128006_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0128006_49	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0128006_50	PHROG	phrog_9804	NA	unknown function
UHGV-0128006_51	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128006_51	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0128006_51	Pfam	PF19808	NA	DUF6291
UHGV-0128006_51	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0128006_51	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0128006_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128006_51	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0128006_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0128006_52	UniRef90	UniRef90_A0A329URB3	Lactamase_B domain-containing protein	NA
UHGV-0128006_52	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0128006_52	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0128006_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0128006_52	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0128006_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0128006_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128006_53	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0128006_53	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0128006_53	Pfam	PF03837	RecT family	RecT
UHGV-0128006_53	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0128006_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0128006_53	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0128006_54	PHROG	phrog_674	NA	unknown function
UHGV-0128006_54	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0128006_54	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0128006_54	Pfam	PF07083	NA	DUF1351
UHGV-0128006_54	Structural annotation	PF07083	NA	NA
UHGV-0128006_58	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0128006_58	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0128006_59	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0128006_59	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-0128006_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128006_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128006_59	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0128006_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128006_60	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0128006_60	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0128006_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128006_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128006_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0128006_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128006_61	UniRef90	UniRef90_A0A2Z4QBH4	HTH cro/C1-type domain-containing protein	NA
UHGV-0128006_61	eggNOG-mapper	1140002.I570_01475	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128006_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128006_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128006_61	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0128006_65	PHROG	phrog_10934	NA	unknown function
UHGV-0128006_65	eggNOG-mapper	883114.HMPREF9709_01227	NA	NA
UHGV-0128006_66	KOfam	K14059	int; integrase	NA
UHGV-0128006_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0128006_66	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0128006_66	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0128006_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128006_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128006_66	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA