UHGV-0128036

Genome information

Genome length 31,292 bps

CDS count 40

Completeness 63.95% (medium-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128036
vOTU ID	vOTU-022774
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330356
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.38
Jumbo phage	No

Genome content
Genome length	31,292 bps
GC content	41.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.12%
Average CDS length	730.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128036_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0128036_2	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0128036_2	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0128036_3	PHROG	phrog_38707	NA	unknown function
UHGV-0128036_3	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-0128036_3	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0128036_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0128036_5	PHROG	phrog_1084	NA	unknown function
UHGV-0128036_5	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0128036_5	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0128036_7	eggNOG-mapper	1009370.ALO_12331	NA	NA
UHGV-0128036_7	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0128036_8	Structural annotation	PF20387	NA	NA
UHGV-0128036_9	PHROG	phrog_334	major head protein	head and packaging
UHGV-0128036_9	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0128036_9	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0128036_9	Pfam	PF13252	NA	DUF4043
UHGV-0128036_9	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0128036_9	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0128036_12	PHROG	phrog_156	portal protein	head and packaging
UHGV-0128036_12	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0128036_12	eggNOG-mapper	1009370.ALO_12396	Tfp pilus assembly protein FimV	NA
UHGV-0128036_12	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0128036_12	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0128036_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0128036_13	COG	COG2868	NA	NA
UHGV-0128036_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0128036_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128036_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0128036_14	UniRef90	UniRef90_UPI0018C84896	phage terminase large subunit	NA
UHGV-0128036_14	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0128036_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128036_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0128036_15	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0128036_15	UniRef90	UniRef90_UPI000D1A0C47	phage terminase small subunit	NA
UHGV-0128036_15	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0128036_15	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0128036_15	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0128036_15	COG	COG5484	NA	NA
UHGV-0128036_15	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0128036_16	eggNOG-mapper	748449.Halha_2167	NA	NA
UHGV-0128036_17	PHROG	phrog_10865	NA	unknown function
UHGV-0128036_17	eggNOG-mapper	1031288.AXAA01000022_gene1578	NA	NA
UHGV-0128036_17	Pfam	PF20505	NA	DUF6731
UHGV-0128036_17	Structural annotation	PF20505, NF001463	NA	NA
UHGV-0128036_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128036_18	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0128036_18	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0128036_18	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0128036_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0128036_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128036_21	UniRef90	UniRef90_R6IGI9	SNF2-related protein	NA
UHGV-0128036_21	eggNOG-mapper	1262914.BN533_00794	SNF2 family	NA
UHGV-0128036_21	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0128036_21	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0128036_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0128036_21	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0128036_22	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128036_22	UniRef90	UniRef90_R6I8M6	VRR-NUC domain-containing protein	NA
UHGV-0128036_22	eggNOG-mapper	1262914.BN533_00795	VRR_NUC	NA
UHGV-0128036_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0128036_23	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128036_23	UniRef90	UniRef90_UPI001CC6CF21	virulence-associated E family protein	NA
UHGV-0128036_23	eggNOG-mapper	1262914.BN533_00796	Virulence-associated protein E	NA
UHGV-0128036_23	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0128036_23	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0128036_23	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0128036_24	PHROG	phrog_16315	NA	unknown function
UHGV-0128036_24	UniRef90	UniRef90_UPI0018C4C267	PcfJ domain-containing protein	NA
UHGV-0128036_24	eggNOG-mapper	1262914.BN533_00797	PcfJ-like protein	NA
UHGV-0128036_24	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0128036_24	Structural annotation	PF14284	NA	NA
UHGV-0128036_26	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0128036_26	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0128036_26	UniRef90	UniRef90_R6IGJ2	DNA-directed DNA polymerase	NA
UHGV-0128036_26	eggNOG-mapper	1262914.BN533_00799	DNA polymerase	NA
UHGV-0128036_26	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0128036_26	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0128036_26	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0128036_27	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128036_27	UniRef90	UniRef90_R6I8M8	Phage-associated protein	NA
UHGV-0128036_27	eggNOG-mapper	1262914.BN533_00800	NA	NA
UHGV-0128036_27	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0128036_27	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0128036_28	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128036_28	UniRef90	UniRef90_A0A533RZP2	NA	NA
UHGV-0128036_28	eggNOG-mapper	1262914.BN533_00801	NA	NA
UHGV-0128036_28	Pfam	PF10926	NA	DUF2800
UHGV-0128036_28	COG	COG2887	RecB family exonuclease	NA
UHGV-0128036_28	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0128036_31	PHROG	phrog_6058	NA	unknown function
UHGV-0128036_31	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-0128036_31	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0128036_31	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0128036_32	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0128036_32	UniRef90	UniRef90_A0A316S6E7	HTH cro/C1-type domain-containing protein	NA
UHGV-0128036_32	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0128036_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128036_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128036_32	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0128036_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128036_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128036_33	UniRef90	UniRef90_A0A316SAV3	Transcriptional regulator	NA
UHGV-0128036_33	eggNOG-mapper	1122947.FR7_1295	sequence-specific DNA binding	NA
UHGV-0128036_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0128036_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128036_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128036_33	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0128036_34	PHROG	phrog_87	metallo-protease	other
UHGV-0128036_34	UniRef90	UniRef90_UPI001032CAF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0128036_34	eggNOG-mapper	679201.HMPREF9334_00293	IrrE N-terminal-like domain	NA
UHGV-0128036_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0128036_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128036_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0128036_36	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128036_36	UniRef90	UniRef90_UPI001CE30EB8	NA	NA
UHGV-0128036_36	eggNOG-mapper	1144664.F973_01559	NA	NA
UHGV-0128036_36	Pfam	PF13643	NA	DUF4145
UHGV-0128036_36	Structural annotation	PF13643, COG1895	NA	NA
UHGV-0128036_40	KOfam	K14059	int; integrase	NA
UHGV-0128036_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0128036_40	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0128036_40	eggNOG-mapper	1123288.SOV_2c10320	Belongs to the 'phage' integrase family	NA
UHGV-0128036_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128036_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128036_40	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA