UHGV-0128053

Genome information

Genome length 34,255 bps

CDS count 52

Completeness 92.24% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128053
vOTU ID	vOTU-061558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313580
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.65
Jumbo phage	No

Genome content
Genome length	34,255 bps
GC content	40.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.07%
Average CDS length	614.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128053_3	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0128053_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0128053_3	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-0128053_3	eggNOG-mapper	742765.HMPREF9457_03372	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0128053_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0128053_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128053_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0128053_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0128053_5	PHROG	phrog_13141	NA	unknown function
UHGV-0128053_5	UniRef90	UniRef90_UPI00156D68EE	H-type lectin domain-containing protein	NA
UHGV-0128053_5	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0128053_5	Structural annotation	PF20747	NA	NA
UHGV-0128053_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0128053_6	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0128053_6	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0128053_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0128053_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0128053_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128053_7	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-0128053_7	eggNOG-mapper	665950.HMPREF1025_02521	NA	NA
UHGV-0128053_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0128053_8	KOfam	K10352	MYH9s; myosin heavy chain 9/10/11/14	NA
UHGV-0128053_8	PHROG	phrog_5218	NA	unknown function
UHGV-0128053_8	UniRef90	UniRef90_A0A1C5SUZ6	Phage-related minor tail protein	NA
UHGV-0128053_8	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0128053_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0128053_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0128053_8	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0128053_10	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-0128053_11	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0128053_11	Structural annotation	PF11836	NA	NA
UHGV-0128053_12	PHROG	phrog_88	major tail protein	tail
UHGV-0128053_12	UniRef90	UniRef90_A0A1C5SV47	Phage major tail protein, phi13 family	NA
UHGV-0128053_12	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0128053_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0128053_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0128053_13	PHROG	phrog_88	major tail protein	tail
UHGV-0128053_13	UniRef90	UniRef90_A0A1C5SV91	Phage major tail protein, phi13 family	NA
UHGV-0128053_13	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0128053_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0128053_13	COG	COG5492	NA	NA
UHGV-0128053_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0128053_14	PHROG	phrog_78	tail terminator	connector
UHGV-0128053_14	eggNOG-mapper	1286171.EAL2_c05940	NA	NA
UHGV-0128053_14	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0128053_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0128053_15	UniRef90	UniRef90_A0A1C5SVA8	Phage protein, HK97 gp10 family	NA
UHGV-0128053_15	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0128053_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0128053_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0128053_15	Structural annotation	TIGR01725	NA	NA
UHGV-0128053_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0128053_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0128053_17	PHROG	phrog_5223	neck protein	connector
UHGV-0128053_17	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0128053_17	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-0128053_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128053_18	UniRef90	UniRef90_A0A1C5SVG4	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128053_18	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0128053_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128053_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128053_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128053_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128053_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128053_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128053_19	UniRef90	UniRef90_A0A1C5SVJ4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128053_19	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0128053_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128053_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128053_19	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0128053_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128053_20	UniRef90	UniRef90_A0A1C5SVM9	Phage portal protein, HK97 family	NA
UHGV-0128053_20	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0128053_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128053_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128053_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128053_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128053_21	UniRef90	UniRef90_A0A1C5SVS8	Phage terminase-like protein, large subunit	NA
UHGV-0128053_21	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0128053_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0128053_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0128053_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128053_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0128053_22	PHROG	phrog_1066	NA	unknown function
UHGV-0128053_22	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0128053_22	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0128053_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128053_23	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0128053_23	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0128053_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0128053_24	eggNOG-mapper	864567.HMPREF8571_0576	NA	NA
UHGV-0128053_24	Structural annotation	PF09254, MF_00278, TIGR03800, COG1787, COG0311	NA	NA
UHGV-0128053_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128053_25	UniRef90	UniRef90_A0A395XJM9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0128053_25	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-0128053_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0128053_25	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0128053_25	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0128053_26	PHROG	phrog_7024	NA	unknown function
UHGV-0128053_26	eggNOG-mapper	1286171.EAL2_808p01590	NA	NA
UHGV-0128053_27	PHROG	phrog_38110	NA	unknown function
UHGV-0128053_28	PHROG	phrog_31991	NA	unknown function
UHGV-0128053_29	PHROG	phrog_32748	NA	unknown function
UHGV-0128053_29	eggNOG-mapper	411461.DORFOR_01147	COG NOG28949 non supervised orthologous group	NA
UHGV-0128053_29	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0128053_31	PHROG	phrog_15198	NA	unknown function
UHGV-0128053_31	UniRef90	UniRef90_A0A3E4F5D3	NA	NA
UHGV-0128053_31	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0128053_31	Pfam	PF04448	NA	DUF551
UHGV-0128053_31	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0128053_32	PHROG	phrog_26445	NA	unknown function
UHGV-0128053_32	UniRef90	UniRef90_A0A414QER8	Sigma70_r4_2 domain-containing protein	NA
UHGV-0128053_32	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0128053_32	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0128053_32	Structural annotation	PF00196	NA	NA
UHGV-0128053_33	PHROG	phrog_15077	NA	unknown function
UHGV-0128053_33	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0128053_33	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0128053_33	Structural annotation	NF038070	NA	NA
UHGV-0128053_34	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128053_34	UniRef90	UniRef90_R6S5E8	NA	NA
UHGV-0128053_34	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0128053_34	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0128053_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128053_34	Structural annotation	PF14297	NA	NA
UHGV-0128053_35	PHROG	phrog_1029	NA	unknown function
UHGV-0128053_35	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0128053_35	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0128053_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0128053_36	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0128053_37	PHROG	phrog_7566	NA	unknown function
UHGV-0128053_37	UniRef90	UniRef90_A0A414QES0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0128053_37	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0128053_38	PHROG	phrog_32342	NA	unknown function
UHGV-0128053_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0128053_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0128053_45	UniRef90	UniRef90_A0A4P6LTT4	Bro-N domain-containing protein	NA
UHGV-0128053_45	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0128053_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0128053_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0128053_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0128053_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0128053_46	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-0128053_46	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0128053_46	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0128053_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128053_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128053_47	UniRef90	UniRef90_A0A1C5RT94	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0128053_47	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128053_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128053_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128053_47	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0128053_48	PHROG	phrog_87	metallo-protease	other
UHGV-0128053_48	UniRef90	UniRef90_A0A415UM51	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0128053_48	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0128053_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0128053_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128053_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0128053_51	PHROG	phrog_16228	NA	unknown function
UHGV-0128053_51	UniRef90	UniRef90_B0G1D4	Uma2 domain-containing protein	NA
UHGV-0128053_51	eggNOG-mapper	742765.HMPREF9457_02091	Putative restriction endonuclease	NA
UHGV-0128053_51	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0128053_51	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0128053_51	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0128053_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0128053_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0128053_52	UniRef90	UniRef90_A0A3E5GSR5	Recombinase family protein	NA
UHGV-0128053_52	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0128053_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0128053_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0128053_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0128053_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0128053_52	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA