UHGV-0128091

Genome information

Genome length 40,183 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128091
vOTU ID	vOTU-068628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311518
BioSample	SAMEA37126918
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.41
Jumbo phage	No

Genome content
Genome length	40,183 bps
GC content	43.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.33%
Average CDS length	615.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128091_1	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0128091_1	Structural annotation	PF10651	NA	NA
UHGV-0128091_2	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0128091_3	PHROG	phrog_3558	tail protein	tail
UHGV-0128091_3	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0128091_3	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0128091_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128091_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0128091_3	COG	COG4926	Phage-related protein	NA
UHGV-0128091_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0128091_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128091_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0128091_4	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0128091_5	PHROG	phrog_23464	NA	unknown function
UHGV-0128091_5	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0128091_5	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-0128091_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0128091_5	Structural annotation	COG5280	NA	NA
UHGV-0128091_6	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-0128091_7	Structural annotation	PF17388	NA	NA
UHGV-0128091_8	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0128091_8	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0128091_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0128091_9	Structural annotation	PF20765	NA	NA
UHGV-0128091_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0128091_10	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0128091_10	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0128091_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0128091_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0128091_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0128091_11	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0128091_11	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0128091_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0128091_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0128091_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0128091_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0128091_12	PHROG	phrog_5223	neck protein	connector
UHGV-0128091_12	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0128091_12	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0128091_12	Structural annotation	TIGR01560	NA	NA
UHGV-0128091_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128091_13	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0128091_13	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0128091_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128091_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128091_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128091_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128091_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128091_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128091_14	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128091_14	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0128091_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128091_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128091_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0128091_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128091_15	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0128091_15	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0128091_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128091_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128091_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128091_16	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0128091_16	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0128091_16	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-0128091_16	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0128091_16	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0128091_16	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0128091_16	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0128091_16	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0128091_16	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0128091_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128091_17	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0128091_17	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0128091_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0128091_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0128091_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128091_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0128091_18	PHROG	phrog_1066	NA	unknown function
UHGV-0128091_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0128091_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128091_19	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0128091_19	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0128091_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0128091_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128091_20	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-0128091_20	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-0128091_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0128091_20	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0128091_22	PHROG	phrog_8684	NA	unknown function
UHGV-0128091_22	UniRef90	UniRef90_A0A373XZJ5	YopX domain-containing protein	NA
UHGV-0128091_22	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0128091_22	Pfam	PF09643	YopX protein	YopX
UHGV-0128091_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0128091_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0128091_24	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128091_24	UniRef90	UniRef90_UPI00189DC125	NA	NA
UHGV-0128091_24	eggNOG-mapper	2754.EH55_06950	NA	NA
UHGV-0128091_24	Pfam	PF12961	NA	DUF3850
UHGV-0128091_24	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0128091_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0128091_25	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0128091_25	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0128091_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0128091_25	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0128091_28	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0128091_28	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0128091_28	UniRef90	UniRef90_R6SWZ2	SF4 helicase domain-containing protein	NA
UHGV-0128091_28	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0128091_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0128091_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128091_28	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0128091_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128091_29	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-0128091_29	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0128091_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0128091_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128091_29	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0128091_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0128091_30	UniRef90	UniRef90_R6T0H0	ERCC4 domain-containing protein	NA
UHGV-0128091_30	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0128091_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0128091_30	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0128091_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0128091_31	PHROG	phrog_18107	NA	unknown function
UHGV-0128091_31	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0128091_31	Structural annotation	PF05037	NA	NA
UHGV-0128091_32	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128091_32	UniRef90	UniRef90_A0A373XZR2	ATP-binding protein	NA
UHGV-0128091_32	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0128091_32	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0128091_38	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0128091_38	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-0128091_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128091_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128091_38	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0128091_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128091_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128091_40	UniRef90	UniRef90_A0A373Y265	XRE family transcriptional regulator	NA
UHGV-0128091_40	eggNOG-mapper	580331.Thit_1413	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128091_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128091_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128091_40	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0128091_42	PHROG	phrog_7974	NA	unknown function
UHGV-0128091_42	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-0128091_42	eggNOG-mapper	1347369.CCAD010000035_gene1055	NA	NA
UHGV-0128091_42	Pfam	PF14020	NA	DUF4236
UHGV-0128091_42	Structural annotation	PF14020	NA	NA
UHGV-0128091_43	KOfam	K14059	int; integrase	NA
UHGV-0128091_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0128091_43	UniRef90	UniRef90_A0A1H7MU61	Site-specific recombinase XerD	NA
UHGV-0128091_43	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0128091_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128091_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128091_43	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0128091_44	KOfam	K02424	fliY, tcyA; L-cystine transport system substrate-binding protein	NA
UHGV-0128091_44	PHROG	phrog_10776	NA	unknown function
UHGV-0128091_44	UniRef90	UniRef90_W0U9K1	Bacterial extracellular solute-binding protein,family 3	NA
UHGV-0128091_44	eggNOG-mapper	1160721.RBI_II00610	Belongs to the bacterial solute-binding protein 3 family	NA
UHGV-0128091_44	Pfam	PF00497	Bacterial extracellular solute-binding proteins, family 3	SBP_bac_3
UHGV-0128091_44	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA
UHGV-0128091_45	UniRef90	UniRef90_W0U8G3	CYTH domain-containing protein	NA
UHGV-0128091_45	eggNOG-mapper	1160721.RBI_II00609	CYTH	NA
UHGV-0128091_45	Pfam	PF01928	CYTH domain	CYTH
UHGV-0128091_46	KOfam	K14058	ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA	NA
UHGV-0128091_46	PHROG	phrog_27769	NA	unknown function
UHGV-0128091_46	UniRef90	UniRef90_A0A1C6EIL5	tRNA 2-thiocytidine biosynthesis protein TtcA	NA
UHGV-0128091_46	eggNOG-mapper	1160721.RBI_II00608	Belongs to the TtcA family	NA
UHGV-0128091_46	Pfam	PF01171	PP-loop family	ATP_bind_3
UHGV-0128091_46	COG	COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	NA
UHGV-0128091_47	KOfam	K14059	int; integrase	NA
UHGV-0128091_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0128091_47	UniRef90	UniRef90_A0A374HXT9	Site-specific integrase	NA
UHGV-0128091_47	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0128091_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128091_47	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0128091_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0128091_48	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0128091_48	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0128091_48	UniRef90	UniRef90_A0A373VNA0	Exonuclease domain-containing protein	NA
UHGV-0128091_48	eggNOG-mapper	864565.HMPREF0379_1203	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0128091_48	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0128091_48	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0128091_48	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0128091_48	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0128091_49	PHROG	phrog_87	metallo-protease	other
UHGV-0128091_49	UniRef90	UniRef90_A0A374HVM5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0128091_49	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0128091_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0128091_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128091_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0128091_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128091_50	UniRef90	UniRef90_A0A374HXY0	XRE family transcriptional regulator	NA
UHGV-0128091_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128091_50	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0128091_50	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0128091_51	UniRef90	UniRef90_A0A373XXU1	XRE family transcriptional regulator	NA
UHGV-0128091_51	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0128091_52	PHROG	phrog_14088	NA	unknown function
UHGV-0128091_52	UniRef90	UniRef90_A0A374HW23	Carboxypeptidase	NA
UHGV-0128091_52	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0128091_57	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0128091_57	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0128091_57	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0128091_57	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128091_57	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0128091_59	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0128091_59	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0128091_59	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0128091_59	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0128091_59	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0128091_60	PHROG	phrog_1499	NA	unknown function
UHGV-0128091_60	UniRef90	UniRef90_A0A2A2IKK4	Chromosome segregation protein SMC (Fragment)	NA
UHGV-0128091_60	eggNOG-mapper	1123263.AUKY01000096_gene1830	AAA ATPase domain	NA
UHGV-0128091_60	Pfam	PF13476	AAA domain	AAA_23
UHGV-0128091_60	COG	COG1196	Chromosome segregation ATPase Smc	NA