UHGV-0128101

Genome information

Genome length 31,940 bps

CDS count 47

Completeness 91.68% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128101
vOTU ID	vOTU-063778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323680
BioSample	SAMN00792090
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.62
Jumbo phage	No

Genome content
Genome length	31,940 bps
GC content	57.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.04%
Average CDS length	629.55 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128101_1	PHROG	phrog_30143	NA	unknown function
UHGV-0128101_1	UniRef90	UniRef90_A0A847W0J4	NA	NA
UHGV-0128101_1	eggNOG-mapper	1232443.BAIA02000095_gene3664	NA	NA
UHGV-0128101_1	Pfam	PF20921	NA	DUF1846_C
UHGV-0128101_1	COG	COG4868	NA	NA
UHGV-0128101_2	PHROG	phrog_199	holin	lysis
UHGV-0128101_2	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0128101_2	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0128101_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128101_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0128101_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0128101_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0128101_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0128101_3	PHROG	phrog_5182	endolysin	lysis
UHGV-0128101_3	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0128101_3	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0128101_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0128101_3	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0128101_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128101_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0128101_4	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0128101_4	Structural annotation	PF18998, PF20328	NA	NA
UHGV-0128101_6	UniRef90	UniRef90_A0A7X4ZPD3	Histidine kinase	NA
UHGV-0128101_6	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0128101_7	PHROG	phrog_13589	NA	unknown function
UHGV-0128101_7	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0128101_8	PHROG	phrog_31538	NA	unknown function
UHGV-0128101_9	PHROG	phrog_15594	NA	unknown function
UHGV-0128101_9	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0128101_9	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0128101_10	PHROG	phrog_24267	NA	unknown function
UHGV-0128101_10	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0128101_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0128101_11	PHROG	phrog_6616	tail protein	tail
UHGV-0128101_11	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0128101_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0128101_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0128101_13	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0128101_13	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0128101_13	COG	COG1511	NA	NA
UHGV-0128101_14	PHROG	phrog_706	NA	unknown function
UHGV-0128101_14	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0128101_14	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0128101_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128101_14	Structural annotation	PF06854	NA	NA
UHGV-0128101_15	PHROG	phrog_11299	NA	unknown function
UHGV-0128101_15	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0128101_15	Structural annotation	PF10666	NA	NA
UHGV-0128101_16	PHROG	phrog_3099	NA	unknown function
UHGV-0128101_16	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0128101_16	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0128101_17	PHROG	phrog_3266	tail completion	connector
UHGV-0128101_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0128101_17	Structural annotation	PF12691	NA	NA
UHGV-0128101_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128101_18	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0128101_18	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0128101_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0128101_18	Structural annotation	PF11114	NA	NA
UHGV-0128101_19	PHROG	phrog_3366	NA	unknown function
UHGV-0128101_19	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0128101_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128101_20	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0128101_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-0128101_21	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0128101_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0128101_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128101_22	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0128101_22	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0128101_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128101_22	Structural annotation	PF06810	NA	NA
UHGV-0128101_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128101_24	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0128101_24	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0128101_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128101_24	Pfam	PF21814	NA	DUF6883
UHGV-0128101_24	COG	COG2369	NA	NA
UHGV-0128101_24	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0128101_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128101_25	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0128101_25	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0128101_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128101_26	PHROG	phrog_1233	NA	unknown function
UHGV-0128101_26	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0128101_26	Structural annotation	PF13058	NA	NA
UHGV-0128101_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128101_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0128101_27	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0128101_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0128101_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0128101_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128101_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128101_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128101_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128101_27	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128101_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128101_29	UniRef90	UniRef90_A0A7D6VSS6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0128101_29	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0128101_29	Pfam	PF07374	NA	DUF1492
UHGV-0128101_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0128101_30	PHROG	phrog_3136	NA	unknown function
UHGV-0128101_30	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0128101_30	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0128101_30	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0128101_30	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0128101_31	PHROG	phrog_5781	NA	unknown function
UHGV-0128101_31	UniRef90	UniRef90_A0A1C6JA96	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0128101_31	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0128101_31	Pfam	PF14359	NA	DUF4406
UHGV-0128101_31	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0128101_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0128101_32	PHROG	phrog_1029	NA	unknown function
UHGV-0128101_32	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0128101_32	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0128101_33	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0128101_33	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0128101_33	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0128101_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0128101_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0128101_34	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0128101_34	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0128101_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0128101_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0128101_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128101_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0128101_35	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0128101_36	KOfam	K03700	recU; recombination protein U	NA
UHGV-0128101_36	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128101_36	UniRef90	UniRef90_A0A1S1V8L2	Holliday junction resolvase RecU	NA
UHGV-0128101_36	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0128101_36	Pfam	PF03838	Recombination protein U	RecU
UHGV-0128101_36	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0128101_36	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0128101_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128101_37	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0128101_37	Structural annotation	PF21578	NA	NA
UHGV-0128101_40	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0128101_40	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0128101_40	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0128101_40	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0128101_40	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0128101_40	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0128101_40	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0128101_40	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0128101_42	PHROG	phrog_5663	NA	unknown function
UHGV-0128101_42	UniRef90	UniRef90_UPI001EDDD6D5	NA	NA
UHGV-0128101_42	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0128101_42	Pfam	PF10386	NA	DUF2441
UHGV-0128101_44	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-0128101_44	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0128101_44	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0128101_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128101_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0128101_46	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-0128101_46	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0128101_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128101_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128101_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0128101_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0128101_47	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0128101_47	eggNOG-mapper	1120971.AUCA01000073_gene2914	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0128101_47	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0128101_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0128101_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA