UHGV-0128106

Genome information

Genome length 34,111 bps

CDS count 45

Completeness 59.88% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128106
vOTU ID	vOTU-037425
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323683
BioSample	SAMN00792090
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.51
Jumbo phage	No

Genome content
Genome length	34,111 bps
GC content	50.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	96.29%
Average CDS length	736.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128106_1	PHROG	phrog_7964	NA	unknown function
UHGV-0128106_1	eggNOG-mapper	1507.HMPREF0262_01166	NA	NA
UHGV-0128106_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0128106_3	eggNOG-mapper	1122605.KB893643_gene671	NA	NA
UHGV-0128106_4	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128106_4	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0128106_4	eggNOG-mapper	313596.RB2501_01430	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0128106_4	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0128106_4	COG	COG2887	RecB family exonuclease	NA
UHGV-0128106_5	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0128106_5	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0128106_5	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0128106_7	PHROG	phrog_15768	NA	unknown function
UHGV-0128106_7	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0128106_7	eggNOG-mapper	411477.PARMER_02072	DnaD domain protein	NA
UHGV-0128106_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128106_7	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0128106_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0128106_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0128106_8	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0128106_8	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0128106_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0128106_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0128106_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128106_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0128106_11	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128106_11	UniRef90	UniRef90_UPI001896B453	NA	NA
UHGV-0128106_11	eggNOG-mapper	1243664.CAVL020000020_gene3193	NA	NA
UHGV-0128106_11	Pfam	PF06356	NA	DUF1064
UHGV-0128106_11	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0128106_13	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0128106_14	PHROG	phrog_20182	NA	unknown function
UHGV-0128106_16	UniRef90	UniRef90_UPI00191FB118	retroviral-like aspartic protease family protein	NA
UHGV-0128106_16	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0128106_16	COG	COG3577	Predicted aspartyl protease	NA
UHGV-0128106_17	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0128106_17	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-0128106_17	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0128106_17	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0128106_18	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-0128106_18	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0128106_19	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0128106_19	UniRef90	UniRef90_E5UUW0	DNA methylase N-4/N-6	NA
UHGV-0128106_19	eggNOG-mapper	484018.BACPLE_00679	NA	NA
UHGV-0128106_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0128106_20	UniRef90	UniRef90_A0A412YQE4	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0128106_20	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-0128106_20	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0128106_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0128106_20	Structural annotation	PF07141	NA	NA
UHGV-0128106_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0128106_21	UniRef90	UniRef90_A0A396M1S7	Terminase	NA
UHGV-0128106_21	eggNOG-mapper	1203611.KB894548_gene2449	domain protein	NA
UHGV-0128106_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0128106_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0128106_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0128106_21	COG	COG5410	NA	NA
UHGV-0128106_21	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0128106_25	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-0128106_27	Structural annotation	PF16774, TIGR01633, COG3499	NA	NA
UHGV-0128106_28	Structural annotation	PF21683	NA	NA
UHGV-0128106_29	eggNOG-mapper	762968.HMPREF9441_00568	NA	NA
UHGV-0128106_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0128106_30	UniRef90	UniRef90_UPI0015F32829	SHOCT domain-containing protein	NA
UHGV-0128106_30	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0128106_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128106_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128106_32	UniRef90	UniRef90_A0A379MU54	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128106_32	eggNOG-mapper	1033732.CAHI01000030_gene1215	Belongs to the peptidase S14 family	NA
UHGV-0128106_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128106_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128106_33	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0128106_33	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0128106_33	eggNOG-mapper	742725.HMPREF9450_01068	NA	NA
UHGV-0128106_33	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0128106_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128106_36	UniRef90	UniRef90_UPI001CF883FB	phage portal protein	NA
UHGV-0128106_36	eggNOG-mapper	742725.HMPREF9450_01066	Phage portal protein	NA
UHGV-0128106_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128106_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128106_36	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0128106_37	eggNOG-mapper	742725.HMPREF9450_01065	NA	NA
UHGV-0128106_37	Structural annotation	PF20459	NA	NA
UHGV-0128106_39	PHROG	phrog_22609	tail fiber protein	tail
UHGV-0128106_39	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0128106_40	Structural annotation	PF03370	NA	NA
UHGV-0128106_45	PHROG	phrog_873	endolysin	head and packaging
UHGV-0128106_45	UniRef90	UniRef90_UPI0018982FB2	structural protein P5	NA
UHGV-0128106_45	eggNOG-mapper	742725.HMPREF9450_00897	NA	NA