UHGV-0128184

Genome information

Genome length 36,817 bps

CDS count 51

Completeness 96.79% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128184
vOTU ID	vOTU-008920
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319113
BioSample	SAMN01779930
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	38
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	111.81
Jumbo phage	No

Genome content
Genome length	36,817 bps
GC content	41.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.77%
Average CDS length	667.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128184_1	PHROG	phrog_1309	endolysin	lysis
UHGV-0128184_1	UniRef90	UniRef90_A0A2H4IZY5	Peptidase C51 domain-containing protein	NA
UHGV-0128184_1	eggNOG-mapper	1051631.F8HGP2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0128184_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0128184_1	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0128184_1	Structural annotation	PF05257, TIGR02219, COG3942	NA	NA
UHGV-0128184_2	PHROG	phrog_962	holin	lysis
UHGV-0128184_2	UniRef90	UniRef90_A0A1V0H822	Phage holin	NA
UHGV-0128184_2	eggNOG-mapper	1282664.H354_07765	COG5546 Small integral membrane protein	NA
UHGV-0128184_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0128184_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0128184_2	COG	COG5546	NA	NA
UHGV-0128184_2	Structural annotation	PF04531, COG5546	NA	NA
UHGV-0128184_3	PHROG	phrog_199	holin	lysis
UHGV-0128184_3	UniRef90	UniRef90_A0A2A5QG13	Holin	NA
UHGV-0128184_3	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0128184_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128184_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0128184_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0128184_4	PHROG	phrog_17240	NA	unknown function
UHGV-0128184_4	UniRef90	UniRef90_A0A8B1YVU1	SGNH/GDSL hydrolase family protein	NA
UHGV-0128184_4	eggNOG-mapper	1349822.NSB1T_12060	NA	NA
UHGV-0128184_4	Structural annotation	PF16255, PF07100, NF007403	NA	NA
UHGV-0128184_5	PHROG	phrog_3558	tail protein	tail
UHGV-0128184_5	UniRef90	UniRef90_A0A564TQX2	GBS Bsp-like repeat protein	NA
UHGV-0128184_5	eggNOG-mapper	646413.C5IUK5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0128184_5	Pfam	PF08481	GBS Bsp-like repeat	GBS_Bsp-like
UHGV-0128184_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128184_5	Structural annotation	PF14594, PF08481, TIGR01665, COG4926, COG3330	NA	NA
UHGV-0128184_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128184_6	UniRef90	UniRef90_A0A564TR06	Phage tail protein	NA
UHGV-0128184_6	eggNOG-mapper	646413.C5IUK4_9CAUD	NA	NA
UHGV-0128184_6	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0128184_7	PHROG	phrog_1204	tail protein	tail
UHGV-0128184_7	UniRef90	UniRef90_A0A564TR49	Secretion system effector C (SseC) like family protein	NA
UHGV-0128184_7	eggNOG-mapper	646413.C5IUK3_9CAUD	transmembrane transport	NA
UHGV-0128184_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0128184_7	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0128184_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0128184_8	PHROG	phrog_706	NA	unknown function
UHGV-0128184_8	UniRef90	UniRef90_A0A448A9A1	NA	NA
UHGV-0128184_8	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0128184_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128184_8	Structural annotation	PF06854	NA	NA
UHGV-0128184_9	PHROG	phrog_1061	NA	unknown function
UHGV-0128184_9	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-0128184_9	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-0128184_9	Structural annotation	PF10666	NA	NA
UHGV-0128184_10	PHROG	phrog_820	major tail protein	tail
UHGV-0128184_10	UniRef90	UniRef90_A0A448A8F6	Tail shaft protein	NA
UHGV-0128184_10	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-0128184_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0128184_11	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0128184_11	UniRef90	UniRef90_A0A448A8V0	NA	NA
UHGV-0128184_11	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0128184_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0128184_11	Structural annotation	PF12691	NA	NA
UHGV-0128184_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128184_12	UniRef90	UniRef90_A0A3S4NDX7	Putative minor capsid protein	NA
UHGV-0128184_12	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-0128184_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0128184_12	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0128184_13	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0128184_13	UniRef90	UniRef90_A0A3S4QH21	Putative minor capsid protein 2	NA
UHGV-0128184_13	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0128184_13	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0128184_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0128184_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128184_14	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-0128184_14	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-0128184_15	UniRef90	UniRef90_A0A3S4QL55	Transcription termination factor	NA
UHGV-0128184_15	Structural annotation	PF07498	NA	NA
UHGV-0128184_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0128184_16	UniRef90	UniRef90_C5IUJ5	Major head protein	NA
UHGV-0128184_16	eggNOG-mapper	646413.C5IUJ5_9CAUD	peptidase activity	NA
UHGV-0128184_16	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0128184_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0128184_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128184_17	UniRef90	UniRef90_A0A3S4MNS5	Putative scaffolding protein	NA
UHGV-0128184_17	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0128184_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128184_17	Structural annotation	PF06810	NA	NA
UHGV-0128184_19	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0128184_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128184_19	UniRef90	UniRef90_A0A4D6B3C1	Minor capsid protein	NA
UHGV-0128184_19	eggNOG-mapper	764291.STRUR_2106	Phage minor capsid protein 2	NA
UHGV-0128184_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128184_19	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0128184_19	COG	COG2369	NA	NA
UHGV-0128184_19	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0128184_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128184_20	UniRef90	UniRef90_UPI0011703CB6	phage portal protein	NA
UHGV-0128184_20	eggNOG-mapper	646413.C5IUJ2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0128184_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0128184_20	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0128184_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128184_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128184_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128184_21	UniRef90	UniRef90_G5KEP9	Phage terminase, large subunit, PBSX family	NA
UHGV-0128184_21	eggNOG-mapper	764291.STRUR_2108	Phage terminase, large subunit	NA
UHGV-0128184_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128184_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128184_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128184_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128184_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128184_22	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0128184_22	UniRef90	UniRef90_UPI001CC05E91	phage terminase small subunit	NA
UHGV-0128184_22	eggNOG-mapper	1035189.HMPREF9954_0301	DNA packaging	NA
UHGV-0128184_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0128184_22	COG	COG5484	NA	NA
UHGV-0128184_22	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0128184_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128184_23	UniRef90	UniRef90_A0A116MQC2	NA	NA
UHGV-0128184_23	eggNOG-mapper	1321372.AQQB01000060_gene55	NA	NA
UHGV-0128184_23	Pfam	PF07374	NA	DUF1492
UHGV-0128184_23	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-0128184_24	PHROG	phrog_1814	NA	unknown function
UHGV-0128184_24	UniRef90	UniRef90_T0UT16	NA	NA
UHGV-0128184_24	Pfam	PF07067	NA	DUF1340
UHGV-0128184_24	Structural annotation	PF07067	NA	NA
UHGV-0128184_25	PHROG	phrog_98	NA	unknown function
UHGV-0128184_25	UniRef90	UniRef90_T0THU8	YopX domain-containing protein	NA
UHGV-0128184_25	eggNOG-mapper	1201292.DR75_1652	YopX protein	NA
UHGV-0128184_25	Pfam	PF09643	YopX protein	YopX
UHGV-0128184_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0128184_26	PHROG	phrog_884	NA	unknown function
UHGV-0128184_26	UniRef90	UniRef90_UPI0019132CD2	NA	NA
UHGV-0128184_26	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-0128184_26	Pfam	PF07116	NA	DUF1372
UHGV-0128184_26	Structural annotation	PF07116, COG3585	NA	NA
UHGV-0128184_27	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128184_27	UniRef90	UniRef90_UPI00191316F6	helix-turn-helix domain-containing protein	NA
UHGV-0128184_27	eggNOG-mapper	85154.O34051_BPO12	sequence-specific DNA binding	NA
UHGV-0128184_27	Structural annotation	PF01503, MF_01019, NF007113, COG1694	NA	NA
UHGV-0128184_28	PHROG	phrog_121	NA	unknown function
UHGV-0128184_28	UniRef90	UniRef90_UPI001BECA49C	NA	NA
UHGV-0128184_28	eggNOG-mapper	1095737.HMPREF1110_1213	NA	NA
UHGV-0128184_28	Pfam	PF07852	NA	DUF1642
UHGV-0128184_28	Structural annotation	PF07852	NA	NA
UHGV-0128184_29	PHROG	phrog_13248	NA	unknown function
UHGV-0128184_29	UniRef90	UniRef90_A0A6L6G946	Sporulation protein Cse60	NA
UHGV-0128184_29	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-0128184_29	Structural annotation	PF10957, NF041095	NA	NA
UHGV-0128184_30	PHROG	phrog_5513	NA	unknown function
UHGV-0128184_31	PHROG	phrog_13248	NA	unknown function
UHGV-0128184_31	UniRef90	UniRef90_UPI0015D1E53D	sporulation protein Cse60	NA
UHGV-0128184_31	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-0128184_31	Structural annotation	PF10957, MF_01054	NA	NA
UHGV-0128184_32	PHROG	phrog_1489	NA	unknown function
UHGV-0128184_32	UniRef90	UniRef90_Q9MCL8	ORF12	NA
UHGV-0128184_32	Structural annotation	PF13773	NA	NA
UHGV-0128184_33	Structural annotation	PF10750, MF_01054, NF001220, COG5515	NA	NA
UHGV-0128184_34	PHROG	phrog_1982	NA	unknown function
UHGV-0128184_34	UniRef90	UniRef90_A0A448A968	Gp89	NA
UHGV-0128184_34	Structural annotation	PF13560, NF040507, COG1813	NA	NA
UHGV-0128184_35	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128184_35	UniRef90	UniRef90_U6E9B1	VRR-NUC domain-containing protein	NA
UHGV-0128184_35	eggNOG-mapper	1385385.U6E9B1_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-0128184_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0128184_35	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0128184_36	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0128184_36	UniRef90	UniRef90_U6E974	SF3 helicase domain-containing protein	NA
UHGV-0128184_36	eggNOG-mapper	1051631.F8HGR1_9CAUD	hydrolase activity	NA
UHGV-0128184_36	Pfam	PF19263	NA	DUF5906
UHGV-0128184_36	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0128184_36	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0128184_36	Structural annotation	PF05272, PF03288, TIGR01613, COG3378	NA	NA
UHGV-0128184_37	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0128184_37	UniRef90	UniRef90_F8HGR0	NA	NA
UHGV-0128184_37	eggNOG-mapper	1385385.U6E992_9CAUD	Primase C terminal 1 (PriCT-1)	NA
UHGV-0128184_37	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0128184_37	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0128184_37	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0128184_38	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128184_38	UniRef90	UniRef90_F8HGQ9	NA	NA
UHGV-0128184_38	eggNOG-mapper	365659.smi_0423	NA	NA
UHGV-0128184_38	AcrCatalog	cluster_1061	NA	NA
UHGV-0128184_38	Pfam	PF05037	NA	DUF669
UHGV-0128184_38	Structural annotation	PF05037, MF_00720, NF004948, COG2965	NA	NA
UHGV-0128184_39	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0128184_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128184_39	UniRef90	UniRef90_F8HGQ8	Helicase	NA
UHGV-0128184_39	eggNOG-mapper	1385385.U6E9C9_9CAUD	helicase activity	NA
UHGV-0128184_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0128184_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0128184_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0128184_39	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0128184_40	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128184_40	UniRef90	UniRef90_A0A2U7VK14	Putative DNA-binding protein	NA
UHGV-0128184_40	eggNOG-mapper	365659.smi_0421	AAA domain	NA
UHGV-0128184_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-0128184_40	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0128184_40	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0128184_41	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0128184_41	UniRef90	UniRef90_Q9ZXH1	Gp157	NA
UHGV-0128184_41	eggNOG-mapper	85154.O34039_BPO12	Siphovirus Gp157	NA
UHGV-0128184_41	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0128184_41	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0128184_42	PHROG	phrog_2486	NA	unknown function
UHGV-0128184_42	UniRef90	UniRef90_A0A380JW97	NA	NA
UHGV-0128184_43	PHROG	phrog_904	excisionase	integration and excision
UHGV-0128184_43	UniRef90	UniRef90_A0A0E2Q2P3	Excisionase	NA
UHGV-0128184_43	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-0128184_43	Structural annotation	PF20063	NA	NA
UHGV-0128184_44	PHROG	phrog_8019	NA	unknown function
UHGV-0128184_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0128184_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128184_45	UniRef90	UniRef90_A0A4D6B2I0	HTH cro/C1-type domain-containing protein	NA
UHGV-0128184_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0128184_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128184_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128184_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0128184_46	PHROG	phrog_3220	NA	unknown function
UHGV-0128184_46	UniRef90	UniRef90_A0A385AEZ7	NA	NA
UHGV-0128184_46	eggNOG-mapper	1069533.Sinf_0767	NA	NA
UHGV-0128184_46	Pfam	PF09954	NA	DUF2188
UHGV-0128184_46	Structural annotation	PF09954	NA	NA
UHGV-0128184_47	PHROG	phrog_3150	NA	unknown function
UHGV-0128184_47	eggNOG-mapper	1031288.AXAA01000044_gene1977	NA	NA
UHGV-0128184_48	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128184_48	UniRef90	UniRef90_A0A0E2PJW3	NA	NA
UHGV-0128184_48	eggNOG-mapper	1123302.KB904182_gene105	NA	NA
UHGV-0128184_48	Pfam	PF13643	NA	DUF4145
UHGV-0128184_48	Structural annotation	PF13643	NA	NA
UHGV-0128184_49	PHROG	phrog_14088	NA	unknown function
UHGV-0128184_49	UniRef90	UniRef90_Q7Y4L8	Gp6	NA
UHGV-0128184_49	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0128184_50	PHROG	phrog_4761	NA	unknown function
UHGV-0128184_50	eggNOG-mapper	365659.smi_1366	NA	NA
UHGV-0128184_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0128184_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0128184_51	UniRef90	UniRef90_A0A4D6B048	Transcriptional repressor	NA
UHGV-0128184_51	eggNOG-mapper	1005705.HMPREF9967_0944	Peptidase S24-like	NA
UHGV-0128184_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128184_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0128184_51	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0128184_51	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA