UHGV-0128223

Genome information

Genome length 45,400 bps

CDS count 84

Completeness 100.00% (complete)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128223
vOTU ID	vOTU-004406
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326677
BioSample	SAMN00792014
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.89
Jumbo phage	No

Genome content
Genome length	45,400 bps
GC content	49.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	84
CDS density	90.75%
Average CDS length	495.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128223_1	PHROG	phrog_38832	NA	unknown function
UHGV-0128223_1	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0128223_4	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-0128223_4	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0128223_4	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0128223_4	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0128223_6	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0128223_6	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-0128223_7	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128223_7	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0128223_7	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0128223_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0128223_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0128223_9	UniRef90	UniRef90_A0A1C6FK91	Replicative DNA helicase	NA
UHGV-0128223_9	eggNOG-mapper	445973.CLOBAR_00032	Participates in initiation and elongation during chromosome replication	NA
UHGV-0128223_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0128223_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0128223_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128223_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0128223_10	PHROG	phrog_15768	NA	unknown function
UHGV-0128223_10	UniRef90	UniRef90_UPI000F8C6244	helix-turn-helix domain-containing protein	NA
UHGV-0128223_10	eggNOG-mapper	1158294.JOMI01000001_gene1618	NA	NA
UHGV-0128223_10	Structural annotation	PF04492, MF_01177, NF041413, COG5625	NA	NA
UHGV-0128223_11	COG	COG4443	NA	NA
UHGV-0128223_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0128223_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128223_12	UniRef90	UniRef90_A0A316PZZ8	Single-stranded DNA-binding protein	NA
UHGV-0128223_12	eggNOG-mapper	1042163.BRLA_c046430	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0128223_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0128223_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0128223_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0128223_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0128223_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0128223_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0128223_13	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128223_13	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0128223_13	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0128223_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0128223_14	PHROG	phrog_1389	NA	unknown function
UHGV-0128223_14	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0128223_14	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0128223_15	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0128223_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0128223_16	UniRef90	UniRef90_UPI00189A2233	siphovirus Gp157 family protein	NA
UHGV-0128223_16	eggNOG-mapper	903814.ELI_1272	Siphovirus Gp157	NA
UHGV-0128223_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0128223_16	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0128223_20	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0128223_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128223_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128223_24	UniRef90	UniRef90_R6EZB0	DNA-binding helix-turn-helix protein	NA
UHGV-0128223_24	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0128223_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128223_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128223_25	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0128223_25	eggNOG-mapper	1408322.JHYK01000019_gene245	Putative restriction endonuclease	NA
UHGV-0128223_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128223_25	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0128223_25	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0128223_26	KOfam	K14059	int; integrase	NA
UHGV-0128223_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0128223_26	UniRef90	UniRef90_R6M673	Putative integrase-phage associated	NA
UHGV-0128223_26	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0128223_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0128223_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128223_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0128223_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0128223_28	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0128223_29	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0128223_31	PHROG	phrog_21718	NA	unknown function
UHGV-0128223_33	PHROG	phrog_881	holin	lysis
UHGV-0128223_33	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0128223_33	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0128223_33	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0128223_33	Structural annotation	PF16938	NA	NA
UHGV-0128223_34	PHROG	phrog_1863	NA	unknown function
UHGV-0128223_34	UniRef90	UniRef90_A0A7X2Z1D1	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0128223_34	eggNOG-mapper	1122918.KB907250_gene3599	NA	NA
UHGV-0128223_35	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0128223_35	PHROG	phrog_329	minor tail protein	tail
UHGV-0128223_35	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0128223_35	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0128223_35	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0128223_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0128223_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0128223_35	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0128223_36	Structural annotation	PF12988	NA	NA
UHGV-0128223_37	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0128223_41	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0128223_41	PHROG	phrog_819	tail protein	tail
UHGV-0128223_41	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0128223_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0128223_41	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0128223_44	PHROG	phrog_6616	tail protein	tail
UHGV-0128223_44	UniRef90	UniRef90_A0A1M7NJ96	Chaperone of endosialidase	NA
UHGV-0128223_44	eggNOG-mapper	1232453.BAIF02000059_gene1614	NA	NA
UHGV-0128223_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0128223_44	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0128223_45	eggNOG-mapper	1280696.ATVY01000086_gene2001	NA	NA
UHGV-0128223_46	PHROG	phrog_1194	NA	unknown function
UHGV-0128223_46	eggNOG-mapper	1000588.HMPREF9965_1690	NA	NA
UHGV-0128223_46	Pfam	PF20458	NA	DUF6711
UHGV-0128223_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0128223_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0128223_47	UniRef90	UniRef90_S9TWQ7	Phage-like protein	NA
UHGV-0128223_47	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-0128223_47	COG	COG1511	NA	NA
UHGV-0128223_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0128223_52	UniRef90	UniRef90_A0A6H1F582	HK97 gp10 family phage protein	NA
UHGV-0128223_52	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0128223_56	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0128223_56	UniRef90	UniRef90_A0A7C7ERB8	NA	NA
UHGV-0128223_56	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0128223_56	Pfam	PF17236	NA	DUF5309
UHGV-0128223_56	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0128223_57	Structural annotation	PF14265	NA	NA
UHGV-0128223_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0128223_58	UniRef90	UniRef90_UPI001CD71C56	phage portal protein	NA
UHGV-0128223_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0128223_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0128223_59	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128223_59	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0128223_59	UniRef90	UniRef90_H2J4B5	Phage terminase, large subunit, PBSX family	NA
UHGV-0128223_59	eggNOG-mapper	443254.Marpi_0320	Terminase RNAseH like domain	NA
UHGV-0128223_59	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128223_59	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128223_59	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128223_59	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128223_59	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128223_61	UniRef90	UniRef90_A0A345MLR2	Chromosome partitioning protein	NA
UHGV-0128223_63	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0128223_63	Structural annotation	PF21291, TIGR02607, COG3093	NA	NA
UHGV-0128223_64	PHROG	phrog_13890	NA	unknown function
UHGV-0128223_64	UniRef90	UniRef90_A0A845MW17	Arc family DNA-binding protein	NA
UHGV-0128223_64	eggNOG-mapper	97139.C824_00677	NA	NA
UHGV-0128223_64	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0128223_69	PHROG	phrog_13126	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0128223_69	UniRef90	UniRef90_A0A1Q6Q8L1	Glycosyl transferase family 2	NA
UHGV-0128223_69	eggNOG-mapper	1226322.HMPREF1545_03849	Glycosyl transferase, family 2	NA
UHGV-0128223_69	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0128223_69	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0128223_69	Pfam	PF07719	Tetratricopeptide repeat	TPR_2
UHGV-0128223_69	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0128223_69	Structural annotation	PF18768, PF13641, MF_00994, MF_00316, TIGR04195, COG0457, COG0463	NA	NA
UHGV-0128223_70	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0128223_70	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0128223_70	UniRef90	UniRef90_A0A4R1S4N0	Prophage antirepressor-like protein	NA
UHGV-0128223_70	eggNOG-mapper	563192.HMPREF0179_02955	BRO family, N-terminal domain	NA
UHGV-0128223_70	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0128223_70	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0128223_70	COG	COG3617	Prophage antirepressor	NA
UHGV-0128223_70	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0128223_71	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0128223_72	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128223_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128223_72	UniRef90	UniRef90_UPI000C081F44	helix-turn-helix domain-containing protein	NA
UHGV-0128223_72	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0128223_72	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128223_73	Pfam	PF20037	NA	DUF6440
UHGV-0128223_73	Structural annotation	PF20037	NA	NA
UHGV-0128223_74	PHROG	phrog_924	NA	unknown function
UHGV-0128223_74	UniRef90	UniRef90_UPI001873F304	NA	NA
UHGV-0128223_74	Pfam	PF04448	NA	DUF551
UHGV-0128223_74	Structural annotation	NF041588	NA	NA
UHGV-0128223_75	PHROG	phrog_22543	NA	unknown function
UHGV-0128223_78	PHROG	phrog_2164	NA	unknown function
UHGV-0128223_79	PHROG	phrog_7704	NA	unknown function
UHGV-0128223_79	UniRef90	UniRef90_X0VL21	NA	NA
UHGV-0128223_79	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-0128223_79	Pfam	PF04448	NA	DUF551
UHGV-0128223_79	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0128223_84	PHROG	phrog_22543	NA	unknown function