UHGV-0128236

Genome information

vOTU vOTU-019810

Genome length 23,061 bps

CDS count 31

Completeness 62.00% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128236
vOTU ID	vOTU-019810
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_328792
BioSample	SAMN00791911
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.74
Jumbo phage	No

Genome content
Genome length	23,061 bps
GC content	42.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.03%
Average CDS length	695.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128236_1	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0128236_1	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0128236_1	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0128236_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128236_1	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0128236_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0128236_2	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0128236_2	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0128236_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0128236_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0128236_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0128236_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0128236_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0128236_3	UniRef90	UniRef90_A0A1I3PY40	Phage-related protein	NA
UHGV-0128236_3	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0128236_3	COG	COG1511	NA	NA
UHGV-0128236_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0128236_4	PHROG	phrog_706	NA	unknown function
UHGV-0128236_4	UniRef90	UniRef90_UPI00129D4CEC	Gp15 family bacteriophage protein	NA
UHGV-0128236_4	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0128236_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128236_4	Structural annotation	PF06854	NA	NA
UHGV-0128236_5	PHROG	phrog_4450	NA	unknown function
UHGV-0128236_5	UniRef90	UniRef90_UPI001F2808D2	AP endonuclease	NA
UHGV-0128236_5	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0128236_5	Pfam	PF20378	NA	DUF6673
UHGV-0128236_5	Structural annotation	PF20378	NA	NA
UHGV-0128236_6	PHROG	phrog_3099	NA	unknown function
UHGV-0128236_6	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0128236_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0128236_7	PHROG	phrog_3266	tail completion	connector
UHGV-0128236_7	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0128236_7	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0128236_7	Structural annotation	PF12691	NA	NA
UHGV-0128236_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128236_8	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0128236_8	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0128236_8	Structural annotation	PF11114	NA	NA
UHGV-0128236_9	PHROG	phrog_3366	NA	unknown function
UHGV-0128236_9	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0128236_9	Pfam	PF20536	NA	DUF6751
UHGV-0128236_9	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0128236_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128236_10	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0128236_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0128236_11	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0128236_11	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0128236_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128236_12	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0128236_12	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0128236_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128236_12	Structural annotation	PF06810	NA	NA
UHGV-0128236_13	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0128236_13	Structural annotation	NF040910	NA	NA
UHGV-0128236_15	PHROG	phrog_11541	NA	unknown function
UHGV-0128236_15	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0128236_16	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0128236_16	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0128236_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128236_17	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0128236_17	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0128236_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128236_17	COG	COG2369	NA	NA
UHGV-0128236_17	Structural annotation	PF06152	NA	NA
UHGV-0128236_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128236_18	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0128236_18	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0128236_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128236_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128236_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0128236_19	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0128236_19	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0128236_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0128236_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128236_19	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0128236_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0128236_20	UniRef90	UniRef90_UPI001D05A70C	transposase	NA
UHGV-0128236_20	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0128236_20	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0128236_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0128236_20	Structural annotation	PF07141	NA	NA
UHGV-0128236_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128236_21	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0128236_21	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0128236_21	Structural annotation	PF02996	NA	NA
UHGV-0128236_23	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0128236_25	PHROG	phrog_15198	NA	unknown function
UHGV-0128236_25	UniRef90	UniRef90_S2YRM1	NA	NA
UHGV-0128236_25	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0128236_27	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128236_27	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-0128236_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0128236_27	Structural annotation	PF13392	NA	NA
UHGV-0128236_28	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0128236_31	PHROG	phrog_2600	NA	unknown function
UHGV-0128236_31	eggNOG-mapper	1178540.BA70_18565	NA	NA