UHGV-0128246

Genome information

Genome length 35,889 bps

CDS count 54

Completeness 94.44% (high-quality)

geNomad score 0.9652

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128246
vOTU ID	vOTU-014798
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325906
BioSample	SAMN00993242
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9652
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.59
Jumbo phage	No

Genome content
Genome length	35,889 bps
GC content	42.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	87.75%
Average CDS length	586.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128246_1	PHROG	phrog_33215	NA	unknown function
UHGV-0128246_1	eggNOG-mapper	575594.ACOH01000010_gene1682	NA	NA
UHGV-0128246_2	PHROG	phrog_28030	NA	unknown function
UHGV-0128246_2	eggNOG-mapper	908339.HMPREF9265_1431	nuclease	NA
UHGV-0128246_2	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0128246_2	Structural annotation	PF02805	NA	NA
UHGV-0128246_3	PHROG	phrog_10934	NA	unknown function
UHGV-0128246_3	UniRef90	UniRef90_UPI000F792B9F	SHOCT domain-containing protein	NA
UHGV-0128246_3	eggNOG-mapper	1545702.LACWKB8_0255	NA	NA
UHGV-0128246_4	PHROG	phrog_87	metallo-protease	other
UHGV-0128246_4	UniRef90	UniRef90_A0A1G9YSH0	Peptidase_M78 domain-containing protein	NA
UHGV-0128246_4	eggNOG-mapper	1235801.C822_00104	Zn peptidase	NA
UHGV-0128246_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0128246_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128246_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0128246_5	PHROG	phrog_16607	NA	unknown function
UHGV-0128246_5	eggNOG-mapper	891391.LAC30SC_09210	NA	NA
UHGV-0128246_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128246_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128246_6	UniRef90	UniRef90_A0A2G4RJW9	Transcriptional regulator	NA
UHGV-0128246_6	eggNOG-mapper	1235801.C822_00419	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128246_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0128246_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128246_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128246_7	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0128246_7	UniRef90	UniRef90_A0A1G9YRJ6	Phage regulatory protein, rha family	NA
UHGV-0128246_7	eggNOG-mapper	334390.LAF_0661	Phage regulatory protein	NA
UHGV-0128246_7	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0128246_7	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0128246_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0128246_7	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0128246_9	PHROG	phrog_12550	NA	unknown function
UHGV-0128246_9	eggNOG-mapper	1605.Lani381_0834	NA	NA
UHGV-0128246_12	PHROG	phrog_823	NA	unknown function
UHGV-0128246_12	UniRef90	UniRef90_UPI0002503D73	NA	NA
UHGV-0128246_12	eggNOG-mapper	1423758.BN55_01550	NA	NA
UHGV-0128246_12	Pfam	PF05595	NA	DUF771
UHGV-0128246_12	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0128246_14	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0128246_14	UniRef90	UniRef90_UPI00053C5691	host-nuclease inhibitor Gam family protein	NA
UHGV-0128246_14	eggNOG-mapper	1203076.CAKF01000007_gene284	Bacteriophage Mu Gam like protein	NA
UHGV-0128246_14	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0128246_14	Structural annotation	PF07352	NA	NA
UHGV-0128246_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128246_15	UniRef90	UniRef90_A0A1G9YTE8	Phage nucleotide-binding protein	NA
UHGV-0128246_15	eggNOG-mapper	1203076.CAKF01000007_gene283	AAA domain	NA
UHGV-0128246_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0128246_15	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0128246_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0128246_16	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128246_16	UniRef90	UniRef90_UPI0006527C0A	NA	NA
UHGV-0128246_16	eggNOG-mapper	1400520.LFAB_15830	NA	NA
UHGV-0128246_16	Pfam	PF05037	NA	DUF669
UHGV-0128246_16	Structural annotation	PF05037, NF005241, COG0629	NA	NA
UHGV-0128246_17	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128246_17	UniRef90	UniRef90_UPI000B1496CE	replication-relaxation family protein	NA
UHGV-0128246_17	eggNOG-mapper	1423807.BACO01000085_gene2475	DnaD domain protein	NA
UHGV-0128246_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128246_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0128246_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128246_18	UniRef90	UniRef90_A0A508YSE2	AAA domain-containing protein	NA
UHGV-0128246_18	eggNOG-mapper	1423816.BACQ01000027_gene964	IstB-like ATP binding protein	NA
UHGV-0128246_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0128246_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0128246_18	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-0128246_19	Structural annotation	PF00684	NA	NA
UHGV-0128246_24	Structural annotation	TIGR01453	NA	NA
UHGV-0128246_25	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0128246_25	eggNOG-mapper	944562.HMPREF9102_0402	NA	NA
UHGV-0128246_25	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0128246_26	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0128246_26	UniRef90	UniRef90_UPI001E5ED65F	helix-turn-helix domain-containing protein	NA
UHGV-0128246_26	eggNOG-mapper	1423755.BAML01000009_gene780	NA	NA
UHGV-0128246_26	Structural annotation	PF13022	NA	NA
UHGV-0128246_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128246_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128246_27	UniRef90	UniRef90_A0A3C1I7N1	PBSX family phage terminase large subunit	NA
UHGV-0128246_27	eggNOG-mapper	1035189.HMPREF9954_0302	Terminase-like family	NA
UHGV-0128246_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128246_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128246_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128246_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128246_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128246_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128246_28	UniRef90	UniRef90_A0A3C1I732	Capsid protein	NA
UHGV-0128246_28	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0128246_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0128246_28	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0128246_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128246_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128246_29	UniRef90	UniRef90_A0A3C1I7B3	Capsid protein	NA
UHGV-0128246_29	eggNOG-mapper	334390.LAF_0931	Phage minor capsid protein 2	NA
UHGV-0128246_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128246_29	COG	COG2369	NA	NA
UHGV-0128246_29	Structural annotation	PF06152	NA	NA
UHGV-0128246_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128246_30	UniRef90	UniRef90_A0A3C1I770	Scaffolding protein	NA
UHGV-0128246_30	eggNOG-mapper	272626.lin0108	Phage minor structural protein GP20	NA
UHGV-0128246_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128246_30	Structural annotation	PF06810	NA	NA
UHGV-0128246_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0128246_31	UniRef90	UniRef90_A0A0R1U3D8	Major capsid family protein	NA
UHGV-0128246_31	eggNOG-mapper	768486.EHR_02620	NA	NA
UHGV-0128246_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0128246_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128246_32	eggNOG-mapper	1196028.ALEF01000043_gene462	NA	NA
UHGV-0128246_33	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0128246_33	UniRef90	UniRef90_A0A3C1I949	Capsid protein	NA
UHGV-0128246_33	eggNOG-mapper	52979.O03932_9CAUD	Minor capsid protein	NA
UHGV-0128246_33	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0128246_33	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0128246_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128246_34	UniRef90	UniRef90_A0A3C1I7R5	Capsid protein	NA
UHGV-0128246_34	eggNOG-mapper	52979.O03933_9CAUD	Minor capsid protein	NA
UHGV-0128246_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0128246_34	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0128246_35	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0128246_35	UniRef90	UniRef90_UPI001E54F846	minor capsid protein	NA
UHGV-0128246_35	eggNOG-mapper	1460635.JCM19038_3471	NA	NA
UHGV-0128246_35	Structural annotation	PF12691	NA	NA
UHGV-0128246_36	PHROG	phrog_820	major tail protein	tail
UHGV-0128246_36	UniRef90	UniRef90_A0A855ZMF8	Capsid protein	NA
UHGV-0128246_36	eggNOG-mapper	52979.O03972_9CAUD	NA	NA
UHGV-0128246_37	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0128246_37	Structural annotation	PF10666	NA	NA
UHGV-0128246_38	PHROG	phrog_706	NA	unknown function
UHGV-0128246_38	UniRef90	UniRef90_A0A0R1T0K3	Bacteriophage Gp15 protein	NA
UHGV-0128246_38	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0128246_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128246_38	Structural annotation	PF06854	NA	NA
UHGV-0128246_39	PHROG	phrog_33360	tail length tape measure protein	tail
UHGV-0128246_40	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0128246_40	UniRef90	UniRef90_UPI000652843D	tape measure protein	NA
UHGV-0128246_40	eggNOG-mapper	438780.D2KRB7_9CAUD	peptidoglycan catabolic process	NA
UHGV-0128246_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0128246_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0128246_40	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0128246_41	PHROG	phrog_30835	NA	unknown function
UHGV-0128246_41	UniRef90	UniRef90_A0A3C1I780	Phage tail family protein	NA
UHGV-0128246_41	eggNOG-mapper	438780.D2KRB8_9CAUD	Phage tail protein	NA
UHGV-0128246_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0128246_41	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0128246_42	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0128246_42	UniRef90	UniRef90_A0A3C1I741	Prophage_tail domain-containing protein	NA
UHGV-0128246_42	eggNOG-mapper	762051.LKI_09735	Prophage endopeptidase tail	NA
UHGV-0128246_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128246_42	COG	COG4926	Phage-related protein	NA
UHGV-0128246_42	Structural annotation	PF06605, PF18994, MF_01370, TIGR01665, COG4926	NA	NA
UHGV-0128246_43	UniRef90	UniRef90_UPI00065283B7	pyocin knob domain-containing protein	NA
UHGV-0128246_43	eggNOG-mapper	944562.HMPREF9102_0424	NA	NA
UHGV-0128246_45	PHROG	phrog_6183	minor tail protein	tail
UHGV-0128246_45	UniRef90	UniRef90_A0A3C1I9X7	BppU_N domain-containing protein	NA
UHGV-0128246_45	eggNOG-mapper	1423814.HMPREF0549_1801	NA	NA
UHGV-0128246_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0128246_45	Structural annotation	PF10651, TIGR03503	NA	NA
UHGV-0128246_48	eggNOG-mapper	1423814.HMPREF0549_1803	NA	NA
UHGV-0128246_49	PHROG	phrog_32402	NA	unknown function
UHGV-0128246_49	UniRef90	UniRef90_A0A3C1I752	XkdX family protein	NA
UHGV-0128246_49	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0128246_50	PHROG	phrog_1009	NA	unknown function
UHGV-0128246_51	PHROG	phrog_2609	holin	lysis
UHGV-0128246_51	UniRef90	UniRef90_UPI000652734A	phage holin, LLH family	NA
UHGV-0128246_51	eggNOG-mapper	1423724.BAMM01000023_gene1895	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0128246_51	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0128246_51	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0128246_52	KOfam	K19223	lytF, cwlE; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]	NA
UHGV-0128246_52	PHROG	phrog_291	endolysin	lysis
UHGV-0128246_52	UniRef90	UniRef90_UPI0006527127	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0128246_52	eggNOG-mapper	349123.Lreu23DRAFT_3849	hydrolase, family 25	NA
UHGV-0128246_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0128246_52	Pfam	PF01476	LysM domain	LysM
UHGV-0128246_52	Pfam	PF00570	HRDC domain	HRDC
UHGV-0128246_52	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0128246_52	COG	COG1388	LysM repeat	NA
UHGV-0128246_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0128246_53	UniRef90	UniRef90_UPI0006693C71	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0128246_53	eggNOG-mapper	1423775.BAMN01000002_gene2065	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0128246_53	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0128246_53	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0128246_54	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0128246_54	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0128246_54	UniRef90	UniRef90_A0A1B3PW83	HicB-like domain-containing protein	NA
UHGV-0128246_54	eggNOG-mapper	349123.Lreu23DRAFT_3134	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0128246_54	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0128246_54	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0128246_54	Structural annotation	PF15919, COG1598	NA	NA