UHGV-0128262

Genome information

Genome length 28,022 bps

CDS count 49

Completeness 87.05% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128262
vOTU ID	vOTU-032345
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324991
BioSample	SAMN00792101
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.42
Jumbo phage	No

Genome content
Genome length	28,022 bps
GC content	32.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.30%
Average CDS length	541.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128262_2	UniRef90	UniRef90_A0A1C5N8K3	Helix-turn-helix	NA
UHGV-0128262_2	eggNOG-mapper	97138.C820_01991	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128262_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128262_2	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0128262_3	PHROG	phrog_1220	head protein	head and packaging
UHGV-0128262_3	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0128262_3	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0128262_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0128262_4	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0128262_4	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0128262_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0128262_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0128262_5	PHROG	phrog_36410	NA	unknown function
UHGV-0128262_5	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-0128262_5	eggNOG-mapper	1120746.CCNL01000017_gene2787	NA	NA
UHGV-0128262_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0128262_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0128262_5	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0128262_6	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0128262_6	PHROG	phrog_23464	NA	unknown function
UHGV-0128262_6	eggNOG-mapper	1121428.DESHY_20147___1	TIGRFAM phage tail tape measure protein, TP901 family, core region	NA
UHGV-0128262_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0128262_6	Structural annotation	COG5280	NA	NA
UHGV-0128262_9	PHROG	phrog_88	major tail protein	tail
UHGV-0128262_9	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0128262_9	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0128262_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0128262_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0128262_10	Structural annotation	PF05657	NA	NA
UHGV-0128262_11	Structural annotation	TIGR01725	NA	NA
UHGV-0128262_12	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0128262_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0128262_13	eggNOG-mapper	428126.CLOSPI_01698	nuclear chromosome segregation	NA
UHGV-0128262_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0128262_14	eggNOG-mapper	1415775.U729_2242	FIVAR domain	NA
UHGV-0128262_14	Pfam	PF07554	FIVAR domain	FIVAR
UHGV-0128262_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0128262_15	PHROG	phrog_24103	NA	unknown function
UHGV-0128262_15	eggNOG-mapper	862969.SCI_1222	NA	NA
UHGV-0128262_17	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0128262_17	Structural annotation	PF12733, COG2372	NA	NA
UHGV-0128262_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0128262_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128262_19	UniRef90	UniRef90_A0A1Y4GX93	Phage major capsid protein	NA
UHGV-0128262_19	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0128262_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128262_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128262_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128262_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128262_20	KOfam	K06904	NA	NA
UHGV-0128262_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0128262_20	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-0128262_20	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0128262_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0128262_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0128262_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0128262_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0128262_21	Structural annotation	PF14205	NA	NA
UHGV-0128262_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128262_22	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0128262_22	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0128262_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128262_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128262_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128262_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128262_23	UniRef90	UniRef90_A0A6N2XFJ0	Phage Terminase	NA
UHGV-0128262_23	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0128262_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0128262_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0128262_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128262_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0128262_24	PHROG	phrog_1066	NA	unknown function
UHGV-0128262_25	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0128262_25	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0128262_25	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0128262_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0128262_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0128262_25	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0128262_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0128262_27	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-0128262_27	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0128262_27	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0128262_27	Structural annotation	PF07141	NA	NA
UHGV-0128262_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0128262_28	PHROG	phrog_435	endolysin	lysis
UHGV-0128262_28	UniRef90	UniRef90_A0A1Y4LB69	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128262_28	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0128262_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0128262_28	Pfam	PF12200	NA	DUF3597
UHGV-0128262_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128262_29	PHROG	phrog_4105	NA	unknown function
UHGV-0128262_29	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0128262_30	PHROG	phrog_1129	holin	lysis
UHGV-0128262_30	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0128262_30	eggNOG-mapper	665956.HMPREF1032_01916	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0128262_30	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0128262_30	Structural annotation	PF16079	NA	NA
UHGV-0128262_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128262_32	UniRef90	UniRef90_A0A6N4TPD2	HTH luxR-type domain-containing protein	NA
UHGV-0128262_32	eggNOG-mapper	138119.DSY2187	DNA-templated transcription, initiation	NA
UHGV-0128262_32	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0128262_37	PHROG	phrog_30343	NA	unknown function
UHGV-0128262_37	UniRef90	UniRef90_A0A417A5J9	N-acetyltransferase	NA
UHGV-0128262_37	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0128262_37	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0128262_46	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128262_46	UniRef90	UniRef90_UPI001D0B2024	ASCH domain-containing protein	NA
UHGV-0128262_46	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0128262_46	Pfam	PF12961	NA	DUF3850
UHGV-0128262_46	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0128262_48	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0128262_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0128262_48	UniRef90	UniRef90_A0A6N4TM83	Integrase	NA
UHGV-0128262_48	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0128262_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128262_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0128262_48	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA