UHGV-0128268

Genome information

Genome length 41,706 bps

CDS count 62

Completeness 86.25% (medium-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128268
vOTU ID	vOTU-030542
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324985
BioSample	SAMN00792101
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.21
Jumbo phage	No

Genome content
Genome length	41,706 bps
GC content	34.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.73%
Average CDS length	636.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128268_2	PHROG	phrog_5319	outer membrane protein	other
UHGV-0128268_2	eggNOG-mapper	471855.Shel_26310	sh3 domain protein	NA
UHGV-0128268_2	COG	COG3103	NA	NA
UHGV-0128268_3	UniRef90	UniRef90_A9KKL5	NlpC/P60 domain-containing protein	NA
UHGV-0128268_3	eggNOG-mapper	357809.Cphy_0799	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0128268_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0128268_3	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0128268_4	PHROG	phrog_199	holin	lysis
UHGV-0128268_4	UniRef90	UniRef90_A9KKL4	Toxin secretion/phage lysis holin	NA
UHGV-0128268_4	eggNOG-mapper	357809.Cphy_0798	Bacteriophage holin family	NA
UHGV-0128268_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128268_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0128268_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0128268_5	PHROG	phrog_2234	tail spike protein	tail
UHGV-0128268_5	UniRef90	UniRef90_A0A2K2FL72	Pectate_lyase_3 domain-containing protein	NA
UHGV-0128268_5	eggNOG-mapper	1033743.CAES01000078_gene3665	Periplasmic copper-binding protein (NosD)	NA
UHGV-0128268_5	COG	COG5434	Polygalacturonase	NA
UHGV-0128268_9	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0128268_9	eggNOG-mapper	642492.Clole_2739	tail collar domain protein	NA
UHGV-0128268_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0128268_9	Structural annotation	PF12571	NA	NA
UHGV-0128268_10	PHROG	phrog_48	tail protein	tail
UHGV-0128268_10	UniRef90	UniRef90_A0A3P6KXK0	Phage tail protein (Tail_P2_I)	NA
UHGV-0128268_10	eggNOG-mapper	97139.C824_03362	Phage tail protein (Tail_P2_I)	NA
UHGV-0128268_10	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0128268_10	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0128268_10	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0128268_10	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0128268_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0128268_11	UniRef90	UniRef90_A0A7X4ZSW6	Baseplate J/gp47 family protein	NA
UHGV-0128268_11	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-0128268_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0128268_11	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0128268_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0128268_12	UniRef90	UniRef90_UPI00143A46E7	lysozyme	NA
UHGV-0128268_12	eggNOG-mapper	478749.BRYFOR_07552	NA	NA
UHGV-0128268_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0128268_12	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0128268_13	PHROG	phrog_76	tail protein	tail
UHGV-0128268_13	UniRef90	UniRef90_UPI0014388938	phage tail protein	NA
UHGV-0128268_13	eggNOG-mapper	1235835.C814_01195	Phage P2 GpU	NA
UHGV-0128268_13	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0128268_13	COG	COG3499	NA	NA
UHGV-0128268_13	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0128268_14	UniRef90	UniRef90_UPI001C3A343B	Phage baseplate assembly protein V	NA
UHGV-0128268_14	eggNOG-mapper	478749.BRYFOR_07550	Baseplate assembly protein	NA
UHGV-0128268_14	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0128268_14	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0128268_14	Structural annotation	PF01176, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0128268_15	KOfam	K06905	NA	NA
UHGV-0128268_15	PHROG	phrog_52	tail protein	tail
UHGV-0128268_15	UniRef90	UniRef90_A0A318EJA4	LysM domain-containing protein	NA
UHGV-0128268_15	eggNOG-mapper	478749.BRYFOR_07549	COG3500 Phage protein D	NA
UHGV-0128268_15	COG	COG3500	NA	NA
UHGV-0128268_15	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0128268_16	PHROG	phrog_46	tail protein	tail
UHGV-0128268_16	UniRef90	UniRef90_A0A3D2I899	Phage tail protein	NA
UHGV-0128268_16	eggNOG-mapper	634994.GCWU000323_00571	Phage Tail Protein X	NA
UHGV-0128268_16	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0128268_16	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0128268_16	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0128268_17	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0128268_17	UniRef90	UniRef90_UPI00143C42D9	phage tail tape measure protein	NA
UHGV-0128268_17	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-0128268_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0128268_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0128268_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0128268_17	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0128268_19	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0128268_19	UniRef90	UniRef90_A0A1M7LVP2	Phage tail assembly chaperone protein, E, or 41 or 14	NA
UHGV-0128268_19	eggNOG-mapper	887325.HMPREF0381_0395	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0128268_19	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0128268_19	Structural annotation	PF10109	NA	NA
UHGV-0128268_20	KOfam	K06908	NA	NA
UHGV-0128268_20	PHROG	phrog_55	head closure	connector
UHGV-0128268_20	UniRef90	UniRef90_E6LKA9	Putative phage major tail tube protein	NA
UHGV-0128268_20	eggNOG-mapper	887325.HMPREF0381_0394	Phage tail tube protein FII	NA
UHGV-0128268_20	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0128268_20	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0128268_20	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0128268_21	KOfam	K06907	NA	NA
UHGV-0128268_21	PHROG	phrog_23	tail sheath	tail
UHGV-0128268_21	UniRef90	UniRef90_A0A173WPQ5	Phage tail sheath protein	NA
UHGV-0128268_21	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-0128268_21	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0128268_21	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0128268_22	PHROG	phrog_4089	NA	unknown function
UHGV-0128268_22	eggNOG-mapper	887325.HMPREF0381_0392	NA	NA
UHGV-0128268_23	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0128268_23	eggNOG-mapper	887325.HMPREF0381_0391	NA	NA
UHGV-0128268_23	Structural annotation	PF08873	NA	NA
UHGV-0128268_24	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0128268_24	UniRef90	UniRef90_UPI001B3C6273	phage tail protein	NA
UHGV-0128268_24	eggNOG-mapper	478749.BRYFOR_07541	NA	NA
UHGV-0128268_24	Structural annotation	PF06763	NA	NA
UHGV-0128268_25	PHROG	phrog_2551	minor tail protein	tail
UHGV-0128268_25	eggNOG-mapper	1415774.U728_503	NA	NA
UHGV-0128268_25	Structural annotation	PF13856	NA	NA
UHGV-0128268_27	PHROG	phrog_29	major head protein	head and packaging
UHGV-0128268_27	UniRef90	UniRef90_A0A3B8S0D0	Phage capsid protein	NA
UHGV-0128268_27	eggNOG-mapper	1203606.HMPREF1526_01904	Phage major capsid protein E	NA
UHGV-0128268_27	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0128268_27	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0128268_28	PHROG	phrog_49	head decoration	head and packaging
UHGV-0128268_28	UniRef90	UniRef90_A0A174T1B2	Peptide-binding protein	NA
UHGV-0128268_28	eggNOG-mapper	445972.ANACOL_03361	NA	NA
UHGV-0128268_28	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0128268_28	Structural annotation	PF02924	NA	NA
UHGV-0128268_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128268_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128268_29	UniRef90	UniRef90_A0A7I8DI08	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128268_29	eggNOG-mapper	1285586.H131_21892	Belongs to the peptidase S14 family	NA
UHGV-0128268_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128268_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128268_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0128268_30	PHROG	phrog_21	portal protein	head and packaging
UHGV-0128268_30	UniRef90	UniRef90_A0A3B8S5Y1	Phage portal protein	NA
UHGV-0128268_30	eggNOG-mapper	857293.CAAU_0797	Phage portal protein, lambda family	NA
UHGV-0128268_30	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0128268_30	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0128268_30	COG	COG5511	Phage capsid protein	NA
UHGV-0128268_30	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0128268_31	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0128268_31	UniRef90	UniRef90_UPI001BE97680	NA	NA
UHGV-0128268_31	eggNOG-mapper	1235793.C809_02659	NA	NA
UHGV-0128268_31	Pfam	PF19645	NA	DUF6148
UHGV-0128268_31	Structural annotation	PF19645	NA	NA
UHGV-0128268_32	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0128268_32	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0128268_32	UniRef90	UniRef90_A0A3B8SEK8	Terminase	NA
UHGV-0128268_32	eggNOG-mapper	1235793.C809_02658	Phage terminase large subunit (GpA)	NA
UHGV-0128268_32	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0128268_32	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0128268_32	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0128268_32	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0128268_32	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0128268_32	Structural annotation	PF20454, PF05876, PF05203, MF_04144, MF_01420, NF005852, NF033889, COG5525, COG1372	NA	NA
UHGV-0128268_33	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0128268_33	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0128268_33	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0128268_33	eggNOG-mapper	1235793.C809_02657	NA	NA
UHGV-0128268_33	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0128268_33	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0128268_34	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0128268_34	PHROG	phrog_216	integrase	integration and excision
UHGV-0128268_34	UniRef90	UniRef90_A0A7X4Z6B1	Site-specific integrase	NA
UHGV-0128268_34	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0128268_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128268_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128268_34	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0128268_35	NCBIFam	TIGR01643.1	YD repeat-containing protein	NA
UHGV-0128268_38	PHROG	phrog_2232	NA	unknown function
UHGV-0128268_38	UniRef90	UniRef90_A0A416J0I3	NA	NA
UHGV-0128268_38	eggNOG-mapper	357809.Cphy_2977	NA	NA
UHGV-0128268_38	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0128268_38	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0128268_41	PHROG	phrog_9107	NA	unknown function
UHGV-0128268_41	UniRef90	UniRef90_C4IGT1	Conserved domain protein	NA
UHGV-0128268_41	eggNOG-mapper	632245.CLP_2625	NA	NA
UHGV-0128268_42	UniRef90	UniRef90_A0A8J7KTR2	NA	NA
UHGV-0128268_42	Pfam	PF04448	NA	DUF551
UHGV-0128268_42	Structural annotation	NF041588	NA	NA
UHGV-0128268_46	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128268_46	UniRef90	UniRef90_A0A0H5SHR0	HNHc domain-containing protein	NA
UHGV-0128268_46	eggNOG-mapper	1235799.C818_02662	HNH endonuclease	NA
UHGV-0128268_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0128268_46	Structural annotation	PF13392	NA	NA
UHGV-0128268_47	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0128268_47	eggNOG-mapper	1235799.C818_02661	NA	NA
UHGV-0128268_47	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0128268_50	UniRef90	UniRef90_UPI001651AABF	beta-glucosidase	NA
UHGV-0128268_52	PHROG	phrog_874	NA	unknown function
UHGV-0128268_52	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0128268_52	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0128268_52	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0128268_56	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0128268_56	UniRef90	UniRef90_A0A174QU75	ParB-like nuclease domain	NA
UHGV-0128268_56	eggNOG-mapper	1196322.A370_05736	Belongs to the ParB family	NA
UHGV-0128268_56	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0128268_56	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0128268_57	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0128268_57	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0128268_57	UniRef90	UniRef90_A0A174QKA2	Sporulation initiation inhibitor protein soj	NA
UHGV-0128268_57	eggNOG-mapper	1145276.T479_20110	Cellulose biosynthesis protein BcsQ	NA
UHGV-0128268_57	Pfam	PF13614	AAA domain	AAA_31
UHGV-0128268_57	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0128268_57	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0128268_58	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0128268_58	UniRef90	UniRef90_A0A3E3DXN5	NA	NA
UHGV-0128268_58	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0128268_58	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0128268_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128268_58	Structural annotation	PF14297	NA	NA
UHGV-0128268_59	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128268_59	Pfam	PF07374	NA	DUF1492
UHGV-0128268_59	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA