UHGV-0128272

Genome information

Genome length 42,036 bps

CDS count 76

Completeness 99.78% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128272
vOTU ID	vOTU-008734
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323514
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.41
Jumbo phage	No

Genome content
Genome length	42,036 bps
GC content	38.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	91.71%
Average CDS length	511.26 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128272_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0128272_1	PHROG	phrog_435	endolysin	lysis
UHGV-0128272_1	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-0128272_1	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-0128272_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0128272_1	Pfam	PF05036	SPOR domain	SPOR
UHGV-0128272_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128272_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0128272_2	PHROG	phrog_1129	holin	lysis
UHGV-0128272_2	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0128272_2	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0128272_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0128272_2	Structural annotation	PF06946	NA	NA
UHGV-0128272_3	PHROG	phrog_4105	NA	unknown function
UHGV-0128272_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0128272_6	PHROG	phrog_18725	NA	unknown function
UHGV-0128272_6	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0128272_8	PHROG	phrog_13879	NA	unknown function
UHGV-0128272_8	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0128272_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0128272_9	PHROG	phrog_1194	NA	unknown function
UHGV-0128272_9	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0128272_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0128272_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0128272_10	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0128272_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0128272_11	PHROG	phrog_706	NA	unknown function
UHGV-0128272_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0128272_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0128272_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128272_11	Structural annotation	PF06854	NA	NA
UHGV-0128272_12	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0128272_12	Pfam	PF20378	NA	DUF6673
UHGV-0128272_12	Structural annotation	PF10666	NA	NA
UHGV-0128272_13	PHROG	phrog_3099	NA	unknown function
UHGV-0128272_13	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0128272_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0128272_14	Structural annotation	PF12691	NA	NA
UHGV-0128272_15	PHROG	phrog_3366	NA	unknown function
UHGV-0128272_15	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0128272_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0128272_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128272_16	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0128272_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0128272_17	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0128272_17	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0128272_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0128272_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128272_18	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0128272_18	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0128272_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128272_21	PHROG	phrog_1233	NA	unknown function
UHGV-0128272_21	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0128272_21	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0128272_22	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0128272_23	PHROG	phrog_20016	NA	unknown function
UHGV-0128272_23	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0128272_23	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0128272_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0128272_24	PHROG	phrog_16490	NA	unknown function
UHGV-0128272_24	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0128272_25	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0128272_26	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0128272_27	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0128272_27	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0128272_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128272_28	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0128272_28	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0128272_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128272_28	COG	COG2369	NA	NA
UHGV-0128272_28	Structural annotation	PF06152	NA	NA
UHGV-0128272_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128272_29	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0128272_29	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0128272_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0128272_29	Structural annotation	PF11114	NA	NA
UHGV-0128272_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128272_31	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0128272_31	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0128272_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128272_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128272_32	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0128272_32	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0128272_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0128272_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0128272_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128272_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128272_32	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128272_33	PHROG	phrog_33130	NA	unknown function
UHGV-0128272_33	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0128272_33	Structural annotation	PF10922	NA	NA
UHGV-0128272_34	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128272_34	UniRef90	UniRef90_A0A4Q2LHE8	GLYCOSYL_HYDROL_F22_1 domain-containing protein	NA
UHGV-0128272_34	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0128272_38	UniRef90	UniRef90_A0A6N7Y2U2	GIY-YIG domain-containing protein	NA
UHGV-0128272_38	eggNOG-mapper	536232.CLM_2069	NA	NA
UHGV-0128272_38	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0128272_38	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0128272_38	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0128272_39	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0128272_39	UniRef90	UniRef90_A0A173UEE2	Predicted transcriptional regulator	NA
UHGV-0128272_39	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0128272_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128272_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128272_39	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0128272_41	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0128272_44	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0128272_44	Structural annotation	PF17457	NA	NA
UHGV-0128272_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0128272_46	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0128272_46	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0128272_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0128272_46	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0128272_48	PHROG	phrog_874	NA	unknown function
UHGV-0128272_48	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0128272_48	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0128272_48	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0128272_50	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0128272_50	UniRef90	UniRef90_A0A3R6FRA8	Restriction alleviation protein, Lar family	NA
UHGV-0128272_50	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0128272_50	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0128272_52	PHROG	phrog_8684	NA	unknown function
UHGV-0128272_52	UniRef90	UniRef90_A0A412KF78	YopX domain-containing protein	NA
UHGV-0128272_52	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0128272_52	Pfam	PF09643	YopX protein	YopX
UHGV-0128272_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0128272_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0128272_53	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0128272_59	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0128272_59	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128272_59	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0128272_59	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0128272_59	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0128272_59	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0128272_59	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0128272_60	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128272_60	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0128272_60	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128272_60	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0128272_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0128272_61	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128272_61	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0128272_61	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0128272_61	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0128272_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0128272_61	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0128272_63	PHROG	phrog_398	NA	unknown function
UHGV-0128272_63	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0128272_63	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0128272_63	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0128272_63	Structural annotation	PF16784	NA	NA
UHGV-0128272_64	PHROG	phrog_14970	NA	unknown function
UHGV-0128272_64	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0128272_64	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0128272_64	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0128272_64	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0128272_64	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0128272_65	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0128272_65	PHROG	phrog_5889	NA	unknown function
UHGV-0128272_65	UniRef90	UniRef90_A0A3R5ZBU3	HD family phosphohydrolase	NA
UHGV-0128272_65	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0128272_65	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0128272_65	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0128272_67	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0128272_69	Structural annotation	PF11127	NA	NA
UHGV-0128272_70	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0128272_70	Pfam	PF15140	NA	DUF4573
UHGV-0128272_70	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0128272_73	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0128272_73	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0128272_73	UniRef90	UniRef90_A0A1Q6KIG7	Transcriptional regulator	NA
UHGV-0128272_73	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0128272_73	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0128272_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128272_73	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128272_73	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0128272_75	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0128272_75	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0128272_75	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0128272_75	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0128272_75	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0128272_76	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0128272_76	PHROG	phrog_95	integrase	integration and excision
UHGV-0128272_76	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0128272_76	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0128272_76	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0128272_76	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0128272_76	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0128272_76	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA