UHGV-0128288

Genome information

Genome length 16,696 bps

CDS count 23

Completeness 87.31% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128288
vOTU ID	vOTU-021183
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_327708
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.34
Jumbo phage	No

Genome content
Genome length	16,696 bps
GC content	48.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	90.39%
Average CDS length	658.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128288_1	Structural annotation	PF13763	NA	NA
UHGV-0128288_7	Structural annotation	PF17427	NA	NA
UHGV-0128288_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0128288_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0128288_9	UniRef90	UniRef90_A0A843HX23	DNA-directed DNA polymerase	NA
UHGV-0128288_9	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0128288_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0128288_9	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0128288_13	Structural annotation	PF20027	NA	NA
UHGV-0128288_15	PHROG	phrog_2150	terminase	head and packaging
UHGV-0128288_15	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0128288_15	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0128288_15	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128288_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0128288_16	PHROG	phrog_435	endolysin	lysis
UHGV-0128288_16	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0128288_16	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128288_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0128288_16	Pfam	PF05036	SPOR domain	SPOR
UHGV-0128288_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128288_16	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0128288_17	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0128288_17	COG	COG3209	NA	NA
UHGV-0128288_17	Structural annotation	PF18013	NA	NA
UHGV-0128288_19	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0128288_19	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0128288_19	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0128288_19	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0128288_20	PHROG	phrog_2248	tail protein	tail
UHGV-0128288_20	UniRef90	UniRef90_A0A843HIT2	Caud_tail_N domain-containing protein	NA
UHGV-0128288_20	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0128288_20	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0128288_20	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0128288_20	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0128288_21	PHROG	phrog_2038	upper collar connector	connector
UHGV-0128288_21	UniRef90	UniRef90_A0A514AAQ6	Upper collar protein	NA
UHGV-0128288_21	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0128288_21	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0128288_21	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0128288_22	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0128288_22	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-0128288_22	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA