UHGV-0128290

Genome information

Genome length 21,119 bps

CDS count 30

Completeness 58.78% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128290
vOTU ID	vOTU-023227
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_320157
BioSample	SAMN00792000
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.17
Jumbo phage	No

Genome content
Genome length	21,119 bps
GC content	39.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	93.12%
Average CDS length	659.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128290_2	PHROG	phrog_8684	NA	unknown function
UHGV-0128290_2	UniRef90	UniRef90_A0A412ULY6	YopX domain-containing protein	NA
UHGV-0128290_2	eggNOG-mapper	411473.RUMCAL_00283	YopX protein	NA
UHGV-0128290_2	Pfam	PF09643	YopX protein	YopX
UHGV-0128290_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0128290_2	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0128290_3	PHROG	phrog_824	NA	unknown function
UHGV-0128290_3	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-0128290_3	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0128290_3	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0128290_3	Structural annotation	PF08774	NA	NA
UHGV-0128290_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128290_5	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0128290_5	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0128290_6	Structural annotation	TIGR01636	NA	NA
UHGV-0128290_7	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128290_7	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0128290_7	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0128290_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0128290_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0128290_8	PHROG	phrog_1066	NA	unknown function
UHGV-0128290_8	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0128290_8	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0128290_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128290_9	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0128290_9	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0128290_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0128290_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0128290_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128290_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0128290_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128290_10	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0128290_10	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0128290_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128290_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128290_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128290_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128290_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128290_11	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128290_11	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0128290_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128290_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128290_11	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0128290_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128290_12	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0128290_12	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0128290_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128290_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128290_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128290_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128290_13	PHROG	phrog_5223	neck protein	connector
UHGV-0128290_13	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0128290_13	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0128290_13	Structural annotation	TIGR01560	NA	NA
UHGV-0128290_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0128290_14	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0128290_14	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0128290_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0128290_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0128290_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0128290_15	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0128290_15	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0128290_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0128290_15	Structural annotation	TIGR01725	NA	NA
UHGV-0128290_16	Structural annotation	PF12691	NA	NA
UHGV-0128290_17	PHROG	phrog_885	major tail protein	tail
UHGV-0128290_17	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0128290_17	eggNOG-mapper	411465.PEPMIC_00741	NA	NA
UHGV-0128290_17	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0128290_20	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0128290_20	eggNOG-mapper	457396.CSBG_01057	tape measure	NA
UHGV-0128290_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0128290_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0128290_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0128290_20	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0128290_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128290_21	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0128290_21	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0128290_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0128290_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0128290_22	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0128290_22	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0128290_22	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0128290_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128290_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0128290_22	COG	COG4926	Phage-related protein	NA
UHGV-0128290_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0128290_23	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0128290_23	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0128290_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0128290_24	PHROG	phrog_291	endolysin	lysis
UHGV-0128290_24	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0128290_24	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-0128290_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0128290_24	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0128290_24	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0128290_25	PHROG	phrog_1863	NA	unknown function
UHGV-0128290_25	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0128290_25	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0128290_26	PHROG	phrog_443	holin	lysis
UHGV-0128290_26	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-0128290_26	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0128290_26	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0128290_26	Structural annotation	PF16945	NA	NA
UHGV-0128290_27	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0128290_27	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0128290_27	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0128290_27	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-0128290_27	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0128290_27	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0128290_27	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0128290_27	COG	COG0338	DNA-adenine methylase	NA
UHGV-0128290_27	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0128290_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0128290_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0128290_28	UniRef90	UniRef90_UPI001E5635E3	recombinase family protein	NA
UHGV-0128290_28	eggNOG-mapper	1408424.JHYI01000021_gene28	Recombinase	NA
UHGV-0128290_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0128290_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-0128290_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0128290_28	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0128290_29	PHROG	phrog_18108	NA	unknown function
UHGV-0128290_29	Structural annotation	PF07443	NA	NA