UHGV-0128294

Genome information

Genome length 18,736 bps

CDS count 28

Completeness 53.52% (medium-quality)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128294
vOTU ID	vOTU-039811
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_338443
BioSample	SAMN01760976
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.21
Jumbo phage	No

Genome content
Genome length	18,736 bps
GC content	44.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	88.44%
Average CDS length	594.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128294_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128294_2	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-0128294_2	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0128294_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128294_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128294_3	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0128294_3	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-0128294_3	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0128294_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128294_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128294_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128294_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128294_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128294_6	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0128294_8	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0128294_8	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0128294_8	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-0128294_8	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0128294_8	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0128294_8	Pfam	PF19263	NA	DUF5906
UHGV-0128294_8	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0128294_8	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0128294_8	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0128294_8	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0128294_9	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128294_9	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-0128294_9	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-0128294_9	Pfam	PF05037	NA	DUF669
UHGV-0128294_9	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0128294_10	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128294_10	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-0128294_10	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0128294_10	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0128294_10	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0128294_11	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0128294_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128294_11	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-0128294_11	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0128294_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0128294_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0128294_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0128294_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0128294_11	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0128294_12	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128294_12	UniRef90	UniRef90_A0A373VPJ3	ATP-binding protein (Fragment)	NA
UHGV-0128294_12	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0128294_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0128294_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0128294_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0128294_13	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0128294_13	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-0128294_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0128294_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0128294_14	PHROG	phrog_15609	NA	unknown function
UHGV-0128294_14	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0128294_14	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0128294_14	Pfam	PF11300	NA	DUF3102
UHGV-0128294_14	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0128294_21	Structural annotation	PF11372	NA	NA
UHGV-0128294_24	UniRef90	UniRef90_A0A373V5W6	XRE family transcriptional regulator	NA
UHGV-0128294_24	eggNOG-mapper	864563.HMPREF9166_1836	NA	NA
UHGV-0128294_24	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0128294_24	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0128294_25	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0128294_25	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0128294_25	UniRef90	UniRef90_A0A373V4F8	Helix-turn-helix domain-containing protein	NA
UHGV-0128294_25	eggNOG-mapper	697329.Rumal_3450	NA	NA
UHGV-0128294_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128294_25	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0128294_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0128294_25	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0128294_26	PHROG	phrog_10292	NA	unknown function
UHGV-0128294_26	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-0128294_26	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0128294_26	Pfam	PF05154	TM2 domain	TM2
UHGV-0128294_26	COG	COG2314	NA	NA
UHGV-0128294_27	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0128294_27	PHROG	phrog_19856	NA	unknown function
UHGV-0128294_27	UniRef90	UniRef90_A0A356CZV8	Mrr_cat domain-containing protein	NA
UHGV-0128294_27	eggNOG-mapper	697329.Rumal_1169	Restriction endonuclease	NA
UHGV-0128294_27	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0128294_27	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0128294_27	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0128294_28	KOfam	K14059	int; integrase	NA
UHGV-0128294_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0128294_28	UniRef90	UniRef90_A0A1C6FGR9	Integrase	NA
UHGV-0128294_28	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-0128294_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0128294_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128294_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128294_28	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA