UHGV-0128359

Genome information

Genome length 29,192 bps

CDS count 59

Completeness 53.53% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128359
vOTU ID	vOTU-040646
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_322284
BioSample	SAMN00715198
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.81
Jumbo phage	No

Genome content
Genome length	29,192 bps
GC content	40.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.17%
Average CDS length	444.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128359_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0128359_4	eggNOG-mapper	428125.CLOLEP_01430	NA	NA
UHGV-0128359_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0128359_6	PHROG	phrog_36029	NA	unknown function
UHGV-0128359_6	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0128359_6	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0128359_7	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128359_7	UniRef90	UniRef90_A0A413BV23	HNHc domain-containing protein	NA
UHGV-0128359_7	eggNOG-mapper	213774.R9R2E1_9CAUD	HNH endonuclease	NA
UHGV-0128359_7	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0128359_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0128359_7	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0128359_8	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0128359_8	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0128359_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0128359_9	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0128359_10	PHROG	phrog_1233	NA	unknown function
UHGV-0128359_10	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0128359_11	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0128359_12	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0128359_14	PHROG	phrog_16490	NA	unknown function
UHGV-0128359_14	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0128359_15	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0128359_16	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0128359_17	eggNOG-mapper	658655.HMPREF0988_00920	NA	NA
UHGV-0128359_18	KOfam	K14059	int; integrase	NA
UHGV-0128359_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0128359_18	UniRef90	UniRef90_R7QYW6	Site-specific recombinase phage integrase family	NA
UHGV-0128359_18	eggNOG-mapper	1121296.JONJ01000003_gene824	Phage integrase family	NA
UHGV-0128359_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0128359_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128359_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128359_18	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0128359_19	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0128359_19	UniRef90	UniRef90_R6C2W3	DNA binding domain excisionase family	NA
UHGV-0128359_19	eggNOG-mapper	411467.BACCAP_04675	Excisionase from transposon Tn916	NA
UHGV-0128359_19	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0128359_19	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0128359_19	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0128359_19	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0128359_21	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0128359_21	UniRef90	UniRef90_A0A413FWV3	NA	NA
UHGV-0128359_21	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0128359_21	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0128359_21	Structural annotation	PF18909	NA	NA
UHGV-0128359_22	PHROG	phrog_9804	NA	unknown function
UHGV-0128359_22	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-0128359_22	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0128359_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0128359_22	Structural annotation	PF11417	NA	NA
UHGV-0128359_23	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0128359_23	UniRef90	UniRef90_K2PHK9	Phage replication protein	NA
UHGV-0128359_23	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0128359_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128359_23	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0128359_24	UniRef90	UniRef90_A0A166T026	NA	NA
UHGV-0128359_24	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0128359_25	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0128359_25	Structural annotation	NF007260	NA	NA
UHGV-0128359_26	PHROG	phrog_874	NA	unknown function
UHGV-0128359_26	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0128359_26	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0128359_28	eggNOG-mapper	246199.CUS_4371	NA	NA
UHGV-0128359_29	PHROG	phrog_10714	NA	unknown function
UHGV-0128359_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0128359_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0128359_31	UniRef90	UniRef90_UPI0018970F97	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0128359_31	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0128359_31	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0128359_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0128359_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0128359_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128359_31	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0128359_32	PHROG	phrog_19106	NA	unknown function
UHGV-0128359_32	UniRef90	UniRef90_R7BHG7	GIY-YIG domain-containing protein	NA
UHGV-0128359_32	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0128359_32	Structural annotation	TIGR01453	NA	NA
UHGV-0128359_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0128359_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128359_33	UniRef90	UniRef90_A0A6N2U0F2	Single-stranded DNA-binding protein	NA
UHGV-0128359_33	eggNOG-mapper	357809.Cphy_3773	Single-stranded DNA-binding protein	NA
UHGV-0128359_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0128359_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0128359_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0128359_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0128359_35	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0128359_35	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0128359_35	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0128359_35	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0128359_35	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0128359_35	dbAPIS	APIS058	NA	NA
UHGV-0128359_35	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0128359_35	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0128359_37	PHROG	phrog_25456	NA	unknown function
UHGV-0128359_38	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128359_38	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0128359_38	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0128359_38	Pfam	PF03837	RecT family	RecT
UHGV-0128359_38	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0128359_40	PHROG	phrog_419	NA	unknown function
UHGV-0128359_40	UniRef90	UniRef90_A0A3F3A3T2	Gp9	NA
UHGV-0128359_40	eggNOG-mapper	536233.CLO_0538	NA	NA
UHGV-0128359_40	Structural annotation	PF14083	NA	NA
UHGV-0128359_41	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0128359_41	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128359_41	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0128359_41	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0128359_41	Pfam	PF13476	AAA domain	AAA_23
UHGV-0128359_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0128359_41	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0128359_49	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0128359_49	UniRef90	UniRef90_A0A373NRG3	ORF6N domain-containing protein	NA
UHGV-0128359_49	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0128359_49	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0128359_49	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0128359_49	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0128359_50	Structural annotation	PF18963	NA	NA
UHGV-0128359_53	UniRef90	UniRef90_A0A1C5RZS0	Transcriptional regulator, y4mF family	NA
UHGV-0128359_53	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128359_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128359_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128359_53	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0128359_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128359_55	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128359_56	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0128359_56	UniRef90	UniRef90_F7JKF7	ORF6N domain-containing protein	NA
UHGV-0128359_56	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0128359_56	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0128359_56	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0128359_57	UniRef90	UniRef90_UPI001C02EDF5	ribbon-helix-helix protein, CopG family	NA
UHGV-0128359_57	eggNOG-mapper	445971.ANASTE_00663	Ribbon-helix-helix protein, copG family	NA
UHGV-0128359_57	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0128359_58	PHROG	phrog_5319	outer membrane protein	other
UHGV-0128359_58	UniRef90	UniRef90_UPI00156DD7EE	zinc ribbon domain-containing protein	NA
UHGV-0128359_58	eggNOG-mapper	1437608.BBIA_0905	sh3 domain protein	NA
UHGV-0128359_58	COG	COG3103	NA	NA
UHGV-0128359_58	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0128359_59	UniRef90	UniRef90_UPI000309D54B	stalk domain-containing protein	NA
UHGV-0128359_59	eggNOG-mapper	1408437.JNJN01000052_gene1002	peptidyl-prolyl cis-trans isomerase activity	NA
UHGV-0128359_59	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0128359_59	COG	COG0760	Peptidyl-prolyl isomerase, parvulin family	NA