UHGV-0128452

Genome information

Genome length 23,351 bps

CDS count 31

Completeness 61.20% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128452
vOTU ID	vOTU-030161
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333829
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.54
Jumbo phage	No

Genome content
Genome length	23,351 bps
GC content	41.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.06%
Average CDS length	703.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128452_1	UniRef90	UniRef90_UPI001EDDCDF6	phage holin family protein	NA
UHGV-0128452_1	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0128452_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128452_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0128452_2	PHROG	phrog_2566	NA	unknown function
UHGV-0128452_2	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0128452_3	PHROG	phrog_6616	tail protein	tail
UHGV-0128452_3	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0128452_3	eggNOG-mapper	86416.Clopa_0591	Phage minor structural protein	NA
UHGV-0128452_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0128452_3	COG	COG4926	Phage-related protein	NA
UHGV-0128452_4	PHROG	phrog_1401	NA	unknown function
UHGV-0128452_4	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0128452_4	Structural annotation	PF07761	NA	NA
UHGV-0128452_5	PHROG	phrog_1194	NA	unknown function
UHGV-0128452_5	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0128452_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0128452_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0128452_6	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0128452_6	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0128452_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0128452_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0128452_7	PHROG	phrog_8355	NA	unknown function
UHGV-0128452_7	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0128452_7	eggNOG-mapper	1282664.H354_06706	NA	NA
UHGV-0128452_8	PHROG	phrog_8300	NA	unknown function
UHGV-0128452_8	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0128452_8	Structural annotation	PF06854	NA	NA
UHGV-0128452_9	PHROG	phrog_820	major tail protein	tail
UHGV-0128452_9	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0128452_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0128452_10	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0128452_10	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0128452_10	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0128452_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0128452_10	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0128452_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128452_11	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0128452_12	PHROG	phrog_8710	NA	unknown function
UHGV-0128452_12	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0128452_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0128452_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128452_13	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0128452_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0128452_14	UniRef90	UniRef90_UPI001D0613D8	phage capsid protein	NA
UHGV-0128452_14	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0128452_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0128452_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0128452_15	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0128452_16	Structural annotation	PF01281	NA	NA
UHGV-0128452_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128452_18	UniRef90	UniRef90_UPI001D08F88B	minor capsid protein	NA
UHGV-0128452_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0128452_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128452_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0128452_18	Structural annotation	PF06152	NA	NA
UHGV-0128452_19	PHROG	phrog_25639	NA	unknown function
UHGV-0128452_19	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0128452_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128452_20	UniRef90	UniRef90_UPI001D072FCD	capsid protein	NA
UHGV-0128452_20	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0128452_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128452_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128452_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0128452_21	UniRef90	UniRef90_UPI000B896FAD	terminase family protein	NA
UHGV-0128452_21	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0128452_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0128452_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128452_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0128452_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0128452_22	UniRef90	UniRef90_A0A6N9QIP1	Helix-turn-helix domain-containing protein	NA
UHGV-0128452_22	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0128452_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0128452_22	Structural annotation	PF07141	NA	NA
UHGV-0128452_23	eggNOG-mapper	1226322.HMPREF1545_00394	NA	NA
UHGV-0128452_24	UniRef90	UniRef90_UPI001ABED7C8	NA	NA
UHGV-0128452_24	eggNOG-mapper	1408422.JHYF01000014_gene221	NA	NA
UHGV-0128452_24	Structural annotation	PF15931, MF_00194, NF001460, COG2974	NA	NA
UHGV-0128452_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128452_25	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-0128452_25	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0128452_25	Pfam	PF07374	NA	DUF1492
UHGV-0128452_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0128452_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0128452_27	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0128452_27	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-0128452_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0128452_27	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0128452_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0128452_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0128452_28	UniRef90	UniRef90_UPI0005C7BE91	DNA cytosine methyltransferase	NA
UHGV-0128452_28	eggNOG-mapper	180332.JTGN01000023_gene1615	Cytosine-specific methyltransferase	NA
UHGV-0128452_28	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0128452_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0128452_28	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0128452_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128452_28	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA