UHGV-0128485

Genome information

Genome length 39,778 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128485
vOTU ID	vOTU-009982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330262
BioSample	SAMN00715135
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.92
Jumbo phage	No

Genome content
Genome length	39,778 bps
GC content	44.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.13%
Average CDS length	650.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128485_1	KOfam	K14059	int; integrase	NA
UHGV-0128485_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0128485_1	UniRef90	UniRef90_A0A373XZZ8	Site-specific integrase	NA
UHGV-0128485_1	eggNOG-mapper	641112.ACOK01000103_gene518	Phage integrase family	NA
UHGV-0128485_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0128485_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128485_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128485_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0128485_2	PHROG	phrog_38135	NA	unknown function
UHGV-0128485_2	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-0128485_2	eggNOG-mapper	1347369.CCAD010000035_gene1055	NA	NA
UHGV-0128485_2	Pfam	PF14020	NA	DUF4236
UHGV-0128485_2	Structural annotation	PF14020	NA	NA
UHGV-0128485_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128485_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128485_4	UniRef90	UniRef90_A0A373Y265	XRE family transcriptional regulator	NA
UHGV-0128485_4	eggNOG-mapper	580331.Thit_1413	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128485_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128485_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128485_4	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0128485_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0128485_6	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-0128485_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0128485_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128485_6	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0128485_9	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0128485_9	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0128485_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128485_14	UniRef90	UniRef90_A0A373XZR2	ATP-binding protein	NA
UHGV-0128485_14	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0128485_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0128485_15	PHROG	phrog_18107	NA	unknown function
UHGV-0128485_15	eggNOG-mapper	476272.RUMHYD_01739	NA	NA
UHGV-0128485_15	Structural annotation	PF05037	NA	NA
UHGV-0128485_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0128485_16	UniRef90	UniRef90_R6T0H0	ERCC4 domain-containing protein	NA
UHGV-0128485_16	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0128485_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0128485_16	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0128485_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0128485_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128485_17	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-0128485_17	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0128485_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0128485_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128485_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0128485_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0128485_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0128485_18	UniRef90	UniRef90_R6SWZ2	SF4 helicase domain-containing protein	NA
UHGV-0128485_18	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0128485_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-0128485_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128485_18	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0128485_21	PHROG	phrog_9958	NA	unknown function
UHGV-0128485_21	UniRef90	UniRef90_W0U729	NA	NA
UHGV-0128485_21	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0128485_21	Pfam	PF19789	NA	DUF6273
UHGV-0128485_21	Structural annotation	PF19789	NA	NA
UHGV-0128485_23	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0128485_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0128485_23	UniRef90	UniRef90_R6SWY4	PAPS_reduct domain-containing protein	NA
UHGV-0128485_23	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0128485_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0128485_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0128485_23	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0128485_24	PHROG	phrog_16951	NA	unknown function
UHGV-0128485_24	UniRef90	UniRef90_A0A1C6DDN5	YopX protein	NA
UHGV-0128485_24	eggNOG-mapper	1160721.RBI_II00399	NA	NA
UHGV-0128485_25	PHROG	phrog_8684	NA	unknown function
UHGV-0128485_25	UniRef90	UniRef90_A0A373XZJ5	YopX domain-containing protein	NA
UHGV-0128485_25	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0128485_25	Pfam	PF09643	YopX protein	YopX
UHGV-0128485_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0128485_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0128485_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128485_27	UniRef90	UniRef90_UPI0018C7F17A	NA	NA
UHGV-0128485_27	eggNOG-mapper	1410624.JNKK01000051_gene2469	sigma factor activity	NA
UHGV-0128485_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0128485_27	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0128485_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128485_28	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0128485_28	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0128485_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0128485_29	PHROG	phrog_1066	NA	unknown function
UHGV-0128485_29	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0128485_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0128485_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128485_30	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0128485_30	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0128485_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0128485_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0128485_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128485_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0128485_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128485_31	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0128485_31	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0128485_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128485_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128485_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128485_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128485_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128485_32	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128485_32	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0128485_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128485_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128485_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0128485_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128485_33	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0128485_33	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0128485_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128485_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128485_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128485_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128485_34	PHROG	phrog_5223	neck protein	connector
UHGV-0128485_34	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0128485_34	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0128485_34	Structural annotation	TIGR01560	NA	NA
UHGV-0128485_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0128485_35	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0128485_35	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0128485_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0128485_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0128485_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0128485_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0128485_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0128485_36	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0128485_36	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0128485_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0128485_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0128485_37	Structural annotation	PF20765	NA	NA
UHGV-0128485_38	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0128485_38	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0128485_38	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0128485_38	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0128485_38	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0128485_38	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0128485_39	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0128485_39	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0128485_39	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0128485_40	Structural annotation	PF17388	NA	NA
UHGV-0128485_41	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-0128485_42	PHROG	phrog_23464	NA	unknown function
UHGV-0128485_42	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0128485_42	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-0128485_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0128485_42	Structural annotation	COG5280	NA	NA
UHGV-0128485_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128485_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0128485_43	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0128485_44	PHROG	phrog_3558	tail protein	tail
UHGV-0128485_44	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0128485_44	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0128485_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128485_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0128485_44	COG	COG4926	Phage-related protein	NA
UHGV-0128485_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0128485_45	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0128485_46	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0128485_46	Structural annotation	PF10651	NA	NA
UHGV-0128485_48	PHROG	phrog_134	NA	unknown function
UHGV-0128485_48	UniRef90	UniRef90_UPI00189C704B	XkdX family protein	NA
UHGV-0128485_48	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0128485_48	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0128485_48	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0128485_48	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0128485_49	PHROG	phrog_199	holin	lysis
UHGV-0128485_49	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-0128485_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128485_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0128485_50	PHROG	phrog_8781	endolysin	lysis
UHGV-0128485_50	UniRef90	UniRef90_A0A373PY71	CHAP domain-containing protein	NA
UHGV-0128485_50	eggNOG-mapper	1179226.AJXO01000005_gene1880	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128485_50	Pfam	PF05257	CHAP domain	CHAP
UHGV-0128485_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128485_50	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0128485_51	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0128485_53	PHROG	phrog_6160	NA	unknown function
UHGV-0128485_53	eggNOG-mapper	1334242.S5W9D9_9VIRU	NA	NA
UHGV-0128485_54	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0128485_54	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0128485_54	UniRef90	UniRef90_A0A373PZX2	XRE family transcriptional regulator	NA
UHGV-0128485_54	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0128485_54	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128485_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0128485_56	UniRef90	UniRef90_W0U9G2	Fibronectin type-III domain-containing protein	NA
UHGV-0128485_56	eggNOG-mapper	1160721.RBI_II00464	self proteolysis	NA
UHGV-0128485_56	COG	COG3209	NA	NA