UHGV-0128633

Genome information

vOTU vOTU-002089

Genome length 38,982 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128633
vOTU ID	vOTU-002089
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_314291
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.1
Jumbo phage	No

Genome content
Genome length	38,982 bps
GC content	58.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.80%
Average CDS length	540.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128633_2	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0128633_2	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0128633_2	eggNOG-mapper	202752.JL53_00755	Phage terminase, small subunit	NA
UHGV-0128633_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0128633_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0128633_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128633_3	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0128633_3	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0128633_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0128633_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0128633_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128633_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0128633_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128633_4	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0128633_4	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0128633_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128633_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0128633_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0128633_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128633_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0128633_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0128633_5	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0128633_5	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0128633_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0128633_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0128633_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0128633_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128633_6	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0128633_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0128633_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128633_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0128633_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128633_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128633_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128633_7	PHROG	phrog_749	NA	unknown function
UHGV-0128633_7	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0128633_8	PHROG	phrog_19734	NA	unknown function
UHGV-0128633_8	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0128633_8	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0128633_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0128633_9	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0128633_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0128633_10	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0128633_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0128633_10	Structural annotation	TIGR01725	NA	NA
UHGV-0128633_11	PHROG	phrog_88	major tail protein	tail
UHGV-0128633_11	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0128633_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0128633_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0128633_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0128633_12	eggNOG-mapper	665950.HMPREF1025_02659	NA	NA
UHGV-0128633_12	Structural annotation	PF11836	NA	NA
UHGV-0128633_14	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0128633_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0128633_14	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0128633_14	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0128633_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0128633_14	Structural annotation	PF20155, MF_04138, COG5280	NA	NA
UHGV-0128633_15	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0128633_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0128633_16	PHROG	phrog_13879	NA	unknown function
UHGV-0128633_16	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0128633_16	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0128633_17	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0128633_17	Structural annotation	PF00354	NA	NA
UHGV-0128633_18	eggNOG-mapper	742738.HMPREF9460_01382	NA	NA
UHGV-0128633_18	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0128633_18	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0128633_20	PHROG	phrog_1382	NA	unknown function
UHGV-0128633_20	eggNOG-mapper	1336234.JAGN01000004_gene512	NA	NA
UHGV-0128633_21	PHROG	phrog_1863	NA	unknown function
UHGV-0128633_21	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0128633_22	PHROG	phrog_13256	NA	unknown function
UHGV-0128633_22	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0128633_24	PHROG	phrog_18955	NA	unknown function
UHGV-0128633_24	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0128633_24	eggNOG-mapper	696369.KI912183_gene2044	exopolysaccharide biosynthesis protein	NA
UHGV-0128633_24	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0128633_24	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0128633_24	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0128633_25	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0128633_25	PHROG	phrog_894	endolysin	lysis
UHGV-0128633_25	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0128633_25	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0128633_25	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0128633_25	COG	COG3108	NA	NA
UHGV-0128633_25	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0128633_27	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0128633_28	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0128633_28	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128633_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128633_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128633_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0128633_31	PHROG	phrog_3754	NA	unknown function
UHGV-0128633_31	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0128633_32	PHROG	phrog_21718	NA	unknown function
UHGV-0128633_32	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0128633_33	PHROG	phrog_22984	NA	unknown function
UHGV-0128633_34	PHROG	phrog_16490	NA	unknown function
UHGV-0128633_34	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0128633_35	PHROG	phrog_20016	NA	unknown function
UHGV-0128633_35	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0128633_35	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0128633_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0128633_37	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0128633_38	KOfam	K14059	int; integrase	NA
UHGV-0128633_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0128633_38	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0128633_38	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0128633_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128633_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128633_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0128633_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128633_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128633_39	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0128633_40	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0128633_40	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0128633_40	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0128633_40	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0128633_40	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0128633_41	PHROG	phrog_22683	NA	unknown function
UHGV-0128633_41	UniRef90	UniRef90_A0A425VTL3	NA	NA
UHGV-0128633_41	eggNOG-mapper	999425.HMPREF9186_01864	NA	NA
UHGV-0128633_41	AcrCatalog	cluster_3962	NA	NA
UHGV-0128633_41	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0128633_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128633_43	UniRef90	UniRef90_A0A096AZX4	HTH cro/C1-type domain-containing protein	NA
UHGV-0128633_43	eggNOG-mapper	742738.HMPREF9460_04038	sequence-specific DNA binding	NA
UHGV-0128633_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0128633_43	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0128633_44	Structural annotation	PF03444, COG0640	NA	NA
UHGV-0128633_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128633_45	UniRef90	UniRef90_A0A1V0QCA1	HTH cro/C1-type domain-containing protein	NA
UHGV-0128633_45	eggNOG-mapper	97138.C820_00784	sequence-specific DNA binding	NA
UHGV-0128633_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128633_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128633_45	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0128633_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0128633_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128633_46	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0128633_46	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0128633_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128633_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0128633_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0128633_47	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0128633_48	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0128633_48	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0128633_48	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128633_48	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0128633_48	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0128633_48	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0128633_49	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128633_49	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0128633_49	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0128633_49	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0128633_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128633_49	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0128633_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0128633_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0128633_50	UniRef90	UniRef90_UPI001C0112E5	AAA family ATPase	NA
UHGV-0128633_50	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0128633_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0128633_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0128633_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128633_50	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0128633_52	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0128633_52	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0128633_52	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0128633_52	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0128633_52	Pfam	PF13614	AAA domain	AAA_31
UHGV-0128633_52	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0128633_52	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0128633_53	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0128633_53	PHROG	phrog_27290	NA	unknown function
UHGV-0128633_53	UniRef90	UniRef90_UPI00195EFCA8	helix-turn-helix domain-containing protein	NA
UHGV-0128633_53	eggNOG-mapper	999413.HMPREF1094_03492	ParB-like nuclease domain	NA
UHGV-0128633_53	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0128633_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128633_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0128633_53	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0128633_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0128633_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128633_56	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0128633_56	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0128633_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0128633_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0128633_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0128633_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0128633_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0128633_57	PHROG	phrog_924	NA	unknown function
UHGV-0128633_57	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0128633_57	Pfam	PF04448	NA	DUF551
UHGV-0128633_59	Structural annotation	PF11717	NA	NA
UHGV-0128633_60	PHROG	phrog_3136	NA	unknown function
UHGV-0128633_60	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0128633_60	Pfam	PF04266	ASCH domain	ASCH
UHGV-0128633_60	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0128633_60	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0128633_65	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128633_65	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0128633_65	Structural annotation	PF21578	NA	NA
UHGV-0128633_66	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128633_66	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0128633_66	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0128633_66	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0128633_66	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA