UHGV-0128650

Genome information

Genome length 37,264 bps

CDS count 48

Completeness 71.25% (medium-quality)

geNomad score 0.9642

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128650
vOTU ID	vOTU-023109
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321446
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9642
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.96
Jumbo phage	No

Genome content
Genome length	37,264 bps
GC content	43.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	96.23%
Average CDS length	750.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128650_2	Structural annotation	PF18957, PF11940, NF038186	NA	NA
UHGV-0128650_3	PHROG	phrog_38707	NA	unknown function
UHGV-0128650_3	eggNOG-mapper	742725.HMPREF9450_00893	tail collar domain protein	NA
UHGV-0128650_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0128650_4	UniRef90	UniRef90_G5H750	BACON domain-containing protein	NA
UHGV-0128650_4	eggNOG-mapper	742725.HMPREF9450_00893	tail collar domain protein	NA
UHGV-0128650_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0128650_4	Structural annotation	PF19190, PF11940, NF007398, COG3121	NA	NA
UHGV-0128650_5	PHROG	phrog_26568	NA	unknown function
UHGV-0128650_5	eggNOG-mapper	742725.HMPREF9450_00892	NA	NA
UHGV-0128650_7	PHROG	phrog_22157	NA	unknown function
UHGV-0128650_7	eggNOG-mapper	742725.HMPREF9450_00889	NA	NA
UHGV-0128650_7	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0128650_8	PHROG	phrog_26705	NA	unknown function
UHGV-0128650_8	UniRef90	UniRef90_A0A174JE48	Chromosome segregation protein	NA
UHGV-0128650_8	eggNOG-mapper	742725.HMPREF9450_00888	Phage-related minor tail protein	NA
UHGV-0128650_8	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0128650_10	PHROG	phrog_6195	tail protein	tail
UHGV-0128650_10	eggNOG-mapper	1347393.HG726021_gene380	NA	NA
UHGV-0128650_12	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0128650_13	eggNOG-mapper	1122971.BAME01000143_gene6481	NA	NA
UHGV-0128650_14	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0128650_14	Structural annotation	PF20459	NA	NA
UHGV-0128650_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128650_16	UniRef90	UniRef90_UPI000B391E6C	phage major capsid protein	NA
UHGV-0128650_16	eggNOG-mapper	292414.TM1040_1668	capsid protein	NA
UHGV-0128650_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128650_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128650_16	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0128650_17	KOfam	K06904	NA	NA
UHGV-0128650_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0128650_17	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0128650_17	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0128650_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0128650_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0128650_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0128650_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0128650_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0128650_18	UniRef90	UniRef90_UPI00111ECBEF	phage portal protein	NA
UHGV-0128650_18	eggNOG-mapper	411476.BACOVA_03926	Phage portal protein	NA
UHGV-0128650_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0128650_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0128650_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128650_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128650_19	UniRef90	UniRef90_UPI000B385012	phage terminase large subunit	NA
UHGV-0128650_19	eggNOG-mapper	1123276.KB893279_gene2250	Phage terminase, large subunit, PBSX family	NA
UHGV-0128650_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128650_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128650_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128650_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0128650_20	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-0128650_20	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-0128650_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0128650_20	Structural annotation	PF07141	NA	NA
UHGV-0128650_23	UniRef90	UniRef90_A0A1M5WNY6	Aspartyl protease	NA
UHGV-0128650_23	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0128650_23	COG	COG3577	Predicted aspartyl protease	NA
UHGV-0128650_25	eggNOG-mapper	641143.HMPREF9331_01101	Homeodomain-like domain	NA
UHGV-0128650_25	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-0128650_25	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0128650_27	Structural annotation	COG4014	NA	NA
UHGV-0128650_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0128650_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0128650_28	UniRef90	UniRef90_A0A4P7VVQ3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0128650_28	eggNOG-mapper	411477.PARMER_02067	C-5 cytosine-specific DNA methylase	NA
UHGV-0128650_28	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0128650_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0128650_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128650_28	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0128650_29	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0128650_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128650_29	UniRef90	UniRef90_I9RH12	Helicase ATP-binding domain-containing protein	NA
UHGV-0128650_29	eggNOG-mapper	411477.PARMER_02069	DNA methylase	NA
UHGV-0128650_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0128650_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0128650_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0128650_29	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0128650_30	UniRef90	UniRef90_A0A7Y7U703	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-0128650_30	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0128650_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0128650_31	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128650_31	UniRef90	UniRef90_UPI001896B6F3	NA	NA
UHGV-0128650_31	eggNOG-mapper	748727.CLJU_c31590	NA	NA
UHGV-0128650_31	Pfam	PF06356	NA	DUF1064
UHGV-0128650_31	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0128650_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0128650_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0128650_33	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0128650_33	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0128650_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0128650_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0128650_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128650_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0128650_34	eggNOG-mapper	665942.HMPREF1022_02905	NA	NA
UHGV-0128650_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128650_35	PHROG	phrog_21138	NA	unknown function
UHGV-0128650_35	eggNOG-mapper	755731.Clo1100_3605	NA	NA
UHGV-0128650_35	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0128650_37	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0128650_38	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128650_38	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0128650_38	eggNOG-mapper	68570.DC74_4918	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0128650_38	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0128650_38	COG	COG2887	RecB family exonuclease	NA
UHGV-0128650_39	eggNOG-mapper	1122605.KB893643_gene671	NA	NA
UHGV-0128650_40	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0128650_44	Structural annotation	PF14084	NA	NA
UHGV-0128650_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0128650_46	UniRef90	UniRef90_A0A4Y1WPK9	Peptidase_S24 domain-containing protein	NA
UHGV-0128650_46	eggNOG-mapper	742725.HMPREF9450_00876	Transcriptional regulator	NA
UHGV-0128650_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0128650_46	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0128650_46	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0128650_47	PHROG	phrog_1847	NA	unknown function
UHGV-0128650_47	UniRef90	UniRef90_A0A3E4ZBY5	NA	NA
UHGV-0128650_47	eggNOG-mapper	762968.HMPREF9441_00590	seryl-tRNA aminoacylation	NA
UHGV-0128650_47	Pfam	PF13250	NA	DUF4041
UHGV-0128650_47	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0128650_47	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0128650_47	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0128650_48	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0128650_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0128650_48	UniRef90	UniRef90_G5H8X3	Tyr recombinase domain-containing protein	NA
UHGV-0128650_48	eggNOG-mapper	742725.HMPREF9450_02059	Belongs to the 'phage' integrase family	NA
UHGV-0128650_48	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0128650_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128650_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128650_48	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA