UHGV-0128763

Genome information

Genome length 36,565 bps

CDS count 49

Completeness 60.03% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128763
vOTU ID	vOTU-023086
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331676
BioSample	SAMN00792023
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	60.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.78
Jumbo phage	No

Genome content
Genome length	36,565 bps
GC content	44.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.84%
Average CDS length	696.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128763_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0128763_1	PHROG	phrog_291	endolysin	lysis
UHGV-0128763_1	UniRef90	UniRef90_A0A6N4APT8	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0128763_1	eggNOG-mapper	537007.BLAHAN_06873	Glycosyl hydrolases family 25	NA
UHGV-0128763_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0128763_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0128763_1	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0128763_2	PHROG	phrog_199	holin	lysis
UHGV-0128763_2	UniRef90	UniRef90_R6RVE6	Toxin secretion/phage lysis holin	NA
UHGV-0128763_2	eggNOG-mapper	1211817.CCAT010000008_gene975	toxin secretion phage lysis holin	NA
UHGV-0128763_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128763_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0128763_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0128763_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0128763_4	PHROG	phrog_25468	NA	unknown function
UHGV-0128763_4	UniRef90	UniRef90_R6SRS7	Hep/Hag repeat protein	NA
UHGV-0128763_4	eggNOG-mapper	658655.HMPREF0988_00101	NA	NA
UHGV-0128763_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0128763_5	PHROG	phrog_1194	NA	unknown function
UHGV-0128763_5	eggNOG-mapper	1499683.CCFF01000017_gene2921	NA	NA
UHGV-0128763_5	Pfam	PF20458	NA	DUF6711
UHGV-0128763_6	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0128763_6	eggNOG-mapper	1215915.BN193_09055	phage tail tape measure protein	NA
UHGV-0128763_6	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0128763_8	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-0128763_8	eggNOG-mapper	1121947.AUHK01000002_gene942	NA	NA
UHGV-0128763_8	Pfam	PF19591	NA	DUF6096
UHGV-0128763_8	Structural annotation	PF19591	NA	NA
UHGV-0128763_10	PHROG	phrog_158	major tail protein	tail
UHGV-0128763_10	UniRef90	UniRef90_A0A174ZXR0	Phage tail protein	NA
UHGV-0128763_10	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0128763_10	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0128763_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0128763_11	Pfam	PF11367	NA	DUF3168
UHGV-0128763_11	Structural annotation	PF05657	NA	NA
UHGV-0128763_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0128763_12	UniRef90	UniRef90_A0A174ZQK8	Mu-like prophage protein gpG	NA
UHGV-0128763_12	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0128763_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0128763_12	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0128763_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0128763_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0128763_14	UniRef90	UniRef90_A0A175A0L9	Phage gp6-like head-tail connector protein	NA
UHGV-0128763_14	eggNOG-mapper	764562.D7RWJ1_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0128763_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0128763_14	Structural annotation	TIGR01560	NA	NA
UHGV-0128763_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-0128763_15	UniRef90	UniRef90_A0A8J6JGV9	Phage capsid protein	NA
UHGV-0128763_15	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0128763_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0128763_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0128763_16	UniRef90	UniRef90_A0A371P084	NA	NA
UHGV-0128763_16	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0128763_16	Pfam	PF14265	NA	DUF4355
UHGV-0128763_16	Structural annotation	PF14265	NA	NA
UHGV-0128763_18	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0128763_18	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0128763_18	UniRef90	UniRef90_A0A174ZQB9	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0128763_18	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0128763_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0128763_18	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0128763_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0128763_18	COG	COG2369	NA	NA
UHGV-0128763_18	Structural annotation	PF04233, TIGR01641, COG2357	NA	NA
UHGV-0128763_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0128763_19	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-0128763_19	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0128763_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0128763_19	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0128763_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0128763_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128763_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128763_20	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-0128763_20	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0128763_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128763_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128763_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128763_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128763_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128763_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0128763_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0128763_21	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-0128763_21	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0128763_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0128763_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0128763_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0128763_22	PHROG	phrog_3243	NA	unknown function
UHGV-0128763_22	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0128763_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128763_23	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0128763_23	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0128763_23	Structural annotation	PF07374	NA	NA
UHGV-0128763_26	PHROG	phrog_5051	NA	unknown function
UHGV-0128763_26	eggNOG-mapper	349123.Lreu23DRAFT_3108	NA	NA
UHGV-0128763_29	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0128763_29	UniRef90	UniRef90_A0A150BAU8	VRR-NUC domain-containing protein	NA
UHGV-0128763_29	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-0128763_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0128763_29	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0128763_30	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0128763_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128763_30	UniRef90	UniRef90_A0A6N8HZM3	Putative DNA repair helicase RadD	NA
UHGV-0128763_30	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0128763_30	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0128763_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0128763_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0128763_30	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0128763_30	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0128763_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128763_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128763_31	UniRef90	UniRef90_UPI000469BE2E	helix-turn-helix domain-containing protein	NA
UHGV-0128763_31	eggNOG-mapper	865861.AZSU01000002_gene2597	Transcriptional	NA
UHGV-0128763_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128763_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0128763_31	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0128763_32	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0128763_32	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0128763_32	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0128763_32	Pfam	PF06048	NA	DUF927
UHGV-0128763_32	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0128763_32	COG	COG5519	NA	NA
UHGV-0128763_32	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0128763_33	PHROG	phrog_18107	NA	unknown function
UHGV-0128763_33	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0128763_33	eggNOG-mapper	536233.CLO_1545	NA	NA
UHGV-0128763_33	Structural annotation	PF05037	NA	NA
UHGV-0128763_34	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128763_34	UniRef90	UniRef90_A0A6P1TM46	AAA family ATPase	NA
UHGV-0128763_34	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0128763_34	Pfam	PF13479	AAA domain	AAA_24
UHGV-0128763_34	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0128763_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0128763_35	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0128763_35	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0128763_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0128763_36	PHROG	phrog_8470	NA	unknown function
UHGV-0128763_36	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0128763_36	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0128763_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0128763_36	Structural annotation	PF14284	NA	NA
UHGV-0128763_37	PHROG	phrog_38338	NA	unknown function
UHGV-0128763_37	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0128763_37	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0128763_38	KOfam	K25373	ACRV1; acrosomal protein SP-10	NA
UHGV-0128763_38	PHROG	phrog_14105	NA	unknown function
UHGV-0128763_38	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0128763_38	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0128763_38	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0128763_38	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0128763_42	UniRef90	UniRef90_L0P7D3	Cro-like protein phage associated	NA
UHGV-0128763_42	eggNOG-mapper	1395587.P364_0126455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128763_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128763_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0128763_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0128763_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0128763_43	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0128763_43	UniRef90	UniRef90_A0A8F2U0U1	XRE family transcriptional regulator	NA
UHGV-0128763_43	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0128763_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0128763_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128763_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0128763_44	PHROG	phrog_1914	NA	unknown function
UHGV-0128763_44	UniRef90	UniRef90_B0MKY6	Putative toxin-antitoxin system, toxin component	NA
UHGV-0128763_44	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0128763_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0128763_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128763_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0128763_46	KOfam	K14059	int; integrase	NA
UHGV-0128763_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0128763_46	UniRef90	UniRef90_R6RJI6	Integrase	NA
UHGV-0128763_46	eggNOG-mapper	1232449.BAHV02000008_gene609	Site-specific recombinase, phage integrase family	NA
UHGV-0128763_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0128763_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128763_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128763_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0128763_49	UniRef90	UniRef90_D4JUD4	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0128763_49	eggNOG-mapper	397291.C804_06592	RHS Repeat	NA
UHGV-0128763_49	COG	COG3209	NA	NA