UHGV-0128797

Genome information

Genome length 29,357 bps

CDS count 49

Completeness 84.01% (medium-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128797
vOTU ID	vOTU-033827
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_310323
BioSample	SAMEA37130668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.81
Jumbo phage	No

Genome content
Genome length	29,357 bps
GC content	56.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.85%
Average CDS length	560.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128797_1	KOfam	K14059	int; integrase	NA
UHGV-0128797_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0128797_1	UniRef90	UniRef90_UPI001C3A4BBE	Site-specific integrase	NA
UHGV-0128797_1	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0128797_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128797_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0128797_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0128797_2	eggNOG-mapper	649831.L083_0393	NA	NA
UHGV-0128797_2	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0128797_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0128797_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0128797_3	UniRef90	UniRef90_UPI001D0E173A	helix-turn-helix domain-containing protein	NA
UHGV-0128797_3	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0128797_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128797_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0128797_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0128797_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0128797_4	UniRef90	UniRef90_A0A8I0L7B6	NA	NA
UHGV-0128797_4	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0128797_4	Pfam	PF05339	NA	DUF739
UHGV-0128797_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128797_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0128797_8	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0128797_10	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0128797_10	Pfam	PF12957	NA	DUF3846
UHGV-0128797_10	Structural annotation	PF12957	NA	NA
UHGV-0128797_11	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0128797_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128797_13	PHROG	phrog_37789	NA	unknown function
UHGV-0128797_18	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0128797_18	PHROG	phrog_200	lipoprotein	other
UHGV-0128797_18	UniRef90	UniRef90_A0A3A6JM18	Prohibitin family protein	NA
UHGV-0128797_18	eggNOG-mapper	748224.HMPREF9436_03073	SPFH Band 7 PHB domain protein	NA
UHGV-0128797_18	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0128797_18	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0128797_18	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0128797_19	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0128797_19	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0128797_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0128797_20	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0128797_20	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0128797_21	PHROG	phrog_7566	NA	unknown function
UHGV-0128797_21	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0128797_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0128797_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128797_22	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0128797_22	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0128797_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0128797_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0128797_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0128797_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0128797_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0128797_23	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0128797_23	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0128797_23	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0128797_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0128797_23	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0128797_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0128797_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0128797_24	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0128797_24	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0128797_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0128797_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0128797_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0128797_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0128797_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128797_27	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0128797_27	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0128797_27	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0128797_28	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128797_28	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0128797_28	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0128797_29	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0128797_29	Structural annotation	PF19962	NA	NA
UHGV-0128797_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0128797_30	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0128797_30	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0128797_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0128797_30	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0128797_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-0128797_31	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0128797_31	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0128797_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0128797_32	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0128797_32	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0128797_32	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0128797_32	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0128797_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0128797_32	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0128797_32	Structural annotation	PF03496, MF_04139, NF040688	NA	NA
UHGV-0128797_34	UniRef90	UniRef90_R5KEQ8	YjcQ protein	NA
UHGV-0128797_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128797_36	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0128797_36	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0128797_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128797_36	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0128797_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0128797_37	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0128797_37	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0128797_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0128797_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0128797_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0128797_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0128797_39	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0128797_39	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0128797_39	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0128797_39	Structural annotation	PF09355	NA	NA
UHGV-0128797_40	PHROG	phrog_501	head closure Hc1	connector
UHGV-0128797_40	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0128797_40	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0128797_40	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0128797_41	PHROG	phrog_387	neck protein	connector
UHGV-0128797_41	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0128797_42	PHROG	phrog_123	tail terminator	connector
UHGV-0128797_42	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0128797_42	Structural annotation	PF06141	NA	NA
UHGV-0128797_43	PHROG	phrog_117	major tail protein	tail
UHGV-0128797_43	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0128797_43	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0128797_43	COG	COG5492	NA	NA
UHGV-0128797_43	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0128797_44	PHROG	phrog_1526	NA	unknown function
UHGV-0128797_44	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0128797_45	Structural annotation	PF17318	NA	NA
UHGV-0128797_46	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0128797_46	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0128797_46	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0128797_46	COG	COG1511	NA	NA
UHGV-0128797_47	PHROG	phrog_36410	NA	unknown function
UHGV-0128797_47	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0128797_47	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0128797_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0128797_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0128797_48	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0128797_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0128797_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0128797_49	PHROG	phrog_9534	head protein	head and packaging
UHGV-0128797_49	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0128797_49	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0128797_49	Structural annotation	PF20747	NA	NA