UHGV-0128817

Genome information

Genome length 35,956 bps

CDS count 53

Completeness 90.46% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128817
vOTU ID	vOTU-066391
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326815
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.7
Jumbo phage	No

Genome content
Genome length	35,956 bps
GC content	39.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.65%
Average CDS length	625.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128817_1	PHROG	phrog_419	NA	unknown function
UHGV-0128817_1	UniRef90	UniRef90_A0A096BXT9	Sugar ABC transporter substrate-binding protein	NA
UHGV-0128817_1	eggNOG-mapper	1401067.HMPREF0872_03940	NA	NA
UHGV-0128817_2	PHROG	phrog_7395	NA	unknown function
UHGV-0128817_2	UniRef90	UniRef90_A0A417IT12	NA	NA
UHGV-0128817_2	eggNOG-mapper	29306.JOBE01000009_gene6854	NA	NA
UHGV-0128817_2	Pfam	PF14015	NA	DUF4231
UHGV-0128817_2	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0128817_3	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0128817_3	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0128817_3	UniRef90	UniRef90_UPI0013EF0F4F	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0128817_3	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0128817_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0128817_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0128817_3	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0128817_4	KOfam	K21463	tcaA; membrane-associated protein TcaA	NA
UHGV-0128817_4	UniRef90	UniRef90_A0A412DWX4	Tetratricopeptide repeat protein	NA
UHGV-0128817_4	Pfam	PF13428	Tetratricopeptide repeat	TPR_14
UHGV-0128817_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0128817_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0128817_5	UniRef90	UniRef90_UPI0015F84BF4	XRE family transcriptional regulator	NA
UHGV-0128817_5	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0128817_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128817_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0128817_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0128817_5	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0128817_6	UniRef90	UniRef90_A0A1M6EVS4	HTH cro/C1-type domain-containing protein	NA
UHGV-0128817_6	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-0128817_6	Pfam	PF05339	NA	DUF739
UHGV-0128817_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0128817_6	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0128817_11	PHROG	phrog_3882	NA	unknown function
UHGV-0128817_12	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0128817_12	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-0128817_12	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0128817_12	Structural annotation	COG2250	NA	NA
UHGV-0128817_15	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0128817_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0128817_15	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0128817_15	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0128817_15	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0128817_18	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0128817_19	PHROG	phrog_674	NA	unknown function
UHGV-0128817_19	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0128817_19	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0128817_19	Pfam	PF07083	NA	DUF1351
UHGV-0128817_19	Structural annotation	PF07083	NA	NA
UHGV-0128817_20	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0128817_20	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128817_20	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0128817_20	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0128817_20	Pfam	PF03837	RecT family	RecT
UHGV-0128817_20	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0128817_20	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0128817_20	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0128817_21	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0128817_21	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0128817_21	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0128817_21	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0128817_21	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0128817_21	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0128817_21	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0128817_22	PHROG	phrog_398	NA	unknown function
UHGV-0128817_22	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0128817_22	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0128817_22	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0128817_22	Structural annotation	PF16784	NA	NA
UHGV-0128817_23	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0128817_23	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0128817_23	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0128817_23	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0128817_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0128817_23	Structural annotation	PF14297	NA	NA
UHGV-0128817_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0128817_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0128817_24	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0128817_24	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0128817_24	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0128817_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0128817_24	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0128817_25	PHROG	phrog_824	NA	unknown function
UHGV-0128817_25	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0128817_25	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0128817_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0128817_25	Structural annotation	PF08774	NA	NA
UHGV-0128817_27	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128817_27	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0128817_27	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0128817_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0128817_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0128817_27	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0128817_28	PHROG	phrog_8684	NA	unknown function
UHGV-0128817_28	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0128817_28	eggNOG-mapper	411473.RUMCAL_00283	YopX protein	NA
UHGV-0128817_28	Pfam	PF09643	YopX protein	YopX
UHGV-0128817_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0128817_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0128817_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128817_30	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0128817_30	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0128817_30	Pfam	PF07374	NA	DUF1492
UHGV-0128817_30	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0128817_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128817_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128817_31	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0128817_31	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0128817_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128817_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128817_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128817_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128817_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128817_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128817_32	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0128817_32	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0128817_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128817_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128817_33	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0128817_33	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0128817_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128817_33	COG	COG2369	NA	NA
UHGV-0128817_33	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0128817_34	PHROG	phrog_2616	NA	unknown function
UHGV-0128817_34	Structural annotation	PF01281	NA	NA
UHGV-0128817_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128817_35	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0128817_35	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0128817_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128817_35	Structural annotation	PF06810	NA	NA
UHGV-0128817_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0128817_36	UniRef90	UniRef90_UPI000F53CC4F	N4-gp56 family major capsid protein	NA
UHGV-0128817_36	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0128817_36	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0128817_36	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0128817_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128817_37	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0128817_37	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0128817_38	PHROG	phrog_3366	NA	unknown function
UHGV-0128817_38	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0128817_38	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0128817_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128817_39	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0128817_39	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0128817_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0128817_39	Structural annotation	PF11114	NA	NA
UHGV-0128817_40	PHROG	phrog_3266	tail completion	connector
UHGV-0128817_40	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0128817_40	Structural annotation	PF20765	NA	NA
UHGV-0128817_41	PHROG	phrog_3099	NA	unknown function
UHGV-0128817_41	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0128817_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0128817_42	PHROG	phrog_11299	NA	unknown function
UHGV-0128817_42	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0128817_42	Structural annotation	PF10666	NA	NA
UHGV-0128817_43	PHROG	phrog_706	NA	unknown function
UHGV-0128817_43	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0128817_43	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0128817_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128817_43	Structural annotation	PF06854	NA	NA
UHGV-0128817_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0128817_45	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0128817_45	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0128817_45	COG	COG1511	NA	NA
UHGV-0128817_45	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0128817_46	PHROG	phrog_1194	NA	unknown function
UHGV-0128817_46	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0128817_46	Pfam	PF20458	NA	DUF6711
UHGV-0128817_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0128817_47	PHROG	phrog_18190	NA	unknown function
UHGV-0128817_47	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0128817_48	PHROG	phrog_2012	minor tail protein	tail
UHGV-0128817_48	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0128817_50	PHROG	phrog_199	holin	lysis
UHGV-0128817_50	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0128817_50	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0128817_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128817_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0128817_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0128817_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0128817_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0128817_51	PHROG	phrog_20388	endolysin	lysis
UHGV-0128817_51	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128817_51	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128817_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0128817_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0128817_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0128817_51	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0128817_52	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0128817_52	PHROG	phrog_6025	DNA methyltransferase	other
UHGV-0128817_52	UniRef90	UniRef90_A0A1X9SII0	Cytosine specific DNA methyltransferase	NA
UHGV-0128817_52	eggNOG-mapper	10689.H9C0B7_BPCPT	N-methyltransferase activity	NA
UHGV-0128817_52	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0128817_52	Structural annotation	PF02390	NA	NA
UHGV-0128817_53	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0128817_53	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0128817_53	UniRef90	UniRef90_UPI00189A9953	site-specific DNA-methyltransferase	NA
UHGV-0128817_53	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0128817_53	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0128817_53	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0128817_53	Structural annotation	PF01555, NF008572, COG0863	NA	NA