UHGV-0128966

Genome information

Genome length 37,127 bps

CDS count 46

Completeness 98.14% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0128966
vOTU ID	vOTU-078399
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_337616
BioSample	SAMN00990124
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.58
Jumbo phage	No

Genome content
Genome length	37,127 bps
GC content	37.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.44%
Average CDS length	757.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0128966_1	KOfam	K14059	int; integrase	NA
UHGV-0128966_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0128966_1	UniRef90	UniRef90_D2J023	Integrase	NA
UHGV-0128966_1	eggNOG-mapper	226185.EF_0303	Belongs to the 'phage' integrase family	NA
UHGV-0128966_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0128966_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0128966_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0128966_2	PHROG	phrog_806	NA	unknown function
UHGV-0128966_2	UniRef90	UniRef90_UPI001371741C	NA	NA
UHGV-0128966_2	eggNOG-mapper	1158607.UAU_02783	NA	NA
UHGV-0128966_2	Pfam	PF16729	NA	DUF5067
UHGV-0128966_2	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0128966_3	UniRef90	UniRef90_UPI001F513D79	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0128966_3	eggNOG-mapper	1234679.BN424_2173	NA	NA
UHGV-0128966_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128966_4	UniRef90	UniRef90_A0A4U3AEL9	ImmA/IrrE family metallo-endopeptidase (Fragment)	NA
UHGV-0128966_4	eggNOG-mapper	1158604.I591_00497	IrrE N-terminal-like domain	NA
UHGV-0128966_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0128966_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0128966_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0128966_5	UniRef90	UniRef90_UPI00163BB44C	helix-turn-helix domain-containing protein	NA
UHGV-0128966_5	eggNOG-mapper	565664.EFXG_02685	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128966_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128966_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0128966_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0128966_6	UniRef90	UniRef90_UPI00136D807A	helix-turn-helix transcriptional regulator	NA
UHGV-0128966_6	eggNOG-mapper	768486.EHR_00845	Helix-turn-helix XRE-family like proteins	NA
UHGV-0128966_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0128966_6	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0128966_7	PHROG	phrog_904	excisionase	integration and excision
UHGV-0128966_7	UniRef90	UniRef90_D2J029	Excisionase	NA
UHGV-0128966_7	eggNOG-mapper	226185.EF_0309	NA	NA
UHGV-0128966_8	PHROG	phrog_1655	NA	unknown function
UHGV-0128966_8	eggNOG-mapper	1300150.EMQU_2298	NA	NA
UHGV-0128966_9	PHROG	phrog_1463	NA	unknown function
UHGV-0128966_10	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128966_10	UniRef90	UniRef90_C7CWF6	Predicted protein	NA
UHGV-0128966_10	eggNOG-mapper	1158609.I586_00055	NA	NA
UHGV-0128966_10	Pfam	PF08279	HTH domain	HTH_11
UHGV-0128966_10	dbAPIS	APIS049	NA	NA
UHGV-0128966_11	PHROG	phrog_6615	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0128966_11	Structural annotation	PF02768, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0128966_12	UniRef90	UniRef90_UPI001D173D81	helix-turn-helix domain-containing protein	NA
UHGV-0128966_13	PHROG	phrog_1605	NA	unknown function
UHGV-0128966_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128966_14	UniRef90	UniRef90_UPI00129CDC02	NA	NA
UHGV-0128966_14	eggNOG-mapper	226185.EF_0319	NA	NA
UHGV-0128966_14	Pfam	PF10926	NA	DUF2800
UHGV-0128966_14	COG	COG2887	RecB family exonuclease	NA
UHGV-0128966_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0128966_15	PHROG	phrog_1669	NA	unknown function
UHGV-0128966_16	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0128966_16	UniRef90	UniRef90_A0A8A6I4L6	NA	NA
UHGV-0128966_16	eggNOG-mapper	226185.EF_0322	NA	NA
UHGV-0128966_16	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0128966_16	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0128966_17	eggNOG-mapper	1158609.I586_00061	NA	NA
UHGV-0128966_18	PHROG	phrog_1548	NA	unknown function
UHGV-0128966_19	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0128966_19	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0128966_19	UniRef90	UniRef90_D2J043	DNA polymerase	NA
UHGV-0128966_19	eggNOG-mapper	673839.D2J043_9CAUD	DNA polymerase family A	NA
UHGV-0128966_19	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0128966_19	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0128966_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0128966_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0128966_20	UniRef90	UniRef90_D2IZR8	Cytosine-specific methyltransferase	NA
UHGV-0128966_20	eggNOG-mapper	673837.D2IZR8_9CAUD	C-5 cytosine-specific DNA methylase	NA
UHGV-0128966_20	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0128966_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0128966_20	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0128966_20	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0128966_21	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128966_21	UniRef90	UniRef90_D2J048	VirE domain protein	NA
UHGV-0128966_21	eggNOG-mapper	226185.EF_0328	Virulence-associated protein E	NA
UHGV-0128966_21	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0128966_21	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0128966_21	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0128966_22	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0128966_22	UniRef90	UniRef90_UPI00032FD14C	VRR-NUC domain-containing protein	NA
UHGV-0128966_22	eggNOG-mapper	226185.EF_0329	VRR_NUC	NA
UHGV-0128966_22	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0128966_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0128966_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0128966_23	UniRef90	UniRef90_D2J050	DNA helicase	NA
UHGV-0128966_23	eggNOG-mapper	673839.D2J050_9CAUD	helicase activity	NA
UHGV-0128966_23	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0128966_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0128966_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0128966_23	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0128966_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0128966_24	UniRef90	UniRef90_A0A2C1ZK68	Sigma70_r4 domain-containing protein	NA
UHGV-0128966_24	eggNOG-mapper	673839.D2J051_9CAUD	DNA-dependent transcription, initiation	NA
UHGV-0128966_25	PHROG	phrog_1202	NA	unknown function
UHGV-0128966_25	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-0128966_25	Structural annotation	PF18789	NA	NA
UHGV-0128966_26	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0128966_26	UniRef90	UniRef90_UPI001A964EE7	phage terminase small subunit	NA
UHGV-0128966_26	eggNOG-mapper	1158601.I585_00702	DNA packaging	NA
UHGV-0128966_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0128966_26	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0128966_26	COG	COG5484	NA	NA
UHGV-0128966_26	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0128966_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0128966_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0128966_27	UniRef90	UniRef90_V7ZP56	Terminase	NA
UHGV-0128966_27	eggNOG-mapper	1234679.BN424_2627	Phage terminase, large subunit	NA
UHGV-0128966_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0128966_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0128966_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0128966_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0128966_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0128966_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0128966_28	UniRef90	UniRef90_V7ZN55	Capsid protein	NA
UHGV-0128966_28	eggNOG-mapper	768486.EHR_02635	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0128966_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0128966_28	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0128966_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0128966_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0128966_29	UniRef90	UniRef90_A0A7Z8WPA9	Capsid protein	NA
UHGV-0128966_29	eggNOG-mapper	1158601.I585_01158	Phage minor capsid protein 2	NA
UHGV-0128966_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0128966_29	COG	COG2369	NA	NA
UHGV-0128966_29	Structural annotation	PF06152	NA	NA
UHGV-0128966_30	PHROG	phrog_918	NA	unknown function
UHGV-0128966_30	UniRef90	UniRef90_UPI000FFEACEB	NA	NA
UHGV-0128966_30	eggNOG-mapper	272626.lin0103	NA	NA
UHGV-0128966_30	Pfam	PF19791	NA	DUF6275
UHGV-0128966_30	Structural annotation	PF19791	NA	NA
UHGV-0128966_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0128966_31	UniRef90	UniRef90_V7ZRB5	Capsid protein	NA
UHGV-0128966_31	eggNOG-mapper	768486.EHR_02625	Phage minor structural protein GP20	NA
UHGV-0128966_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0128966_31	Structural annotation	PF06810	NA	NA
UHGV-0128966_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-0128966_32	UniRef90	UniRef90_V7ZS76	Capsid protein	NA
UHGV-0128966_32	eggNOG-mapper	1158601.I585_01156	NA	NA
UHGV-0128966_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0128966_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0128966_33	UniRef90	UniRef90_I6SVS1	Protein gp8	NA
UHGV-0128966_33	eggNOG-mapper	1234679.BN424_2621	NA	NA
UHGV-0128966_34	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0128966_34	UniRef90	UniRef90_A0A4S2CEY0	Minor capsid protein	NA
UHGV-0128966_34	eggNOG-mapper	768486.EHR_02605	Minor capsid protein	NA
UHGV-0128966_34	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0128966_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0128966_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0128966_35	UniRef90	UniRef90_V7ZQV6	Capsid protein	NA
UHGV-0128966_35	eggNOG-mapper	1158601.I585_01153	Minor capsid protein	NA
UHGV-0128966_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0128966_35	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0128966_36	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0128966_36	UniRef90	UniRef90_V7ZRB1	Capsid protein	NA
UHGV-0128966_36	eggNOG-mapper	1158601.I585_01152	Minor capsid protein from bacteriophage	NA
UHGV-0128966_36	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0128966_36	Structural annotation	PF12691	NA	NA
UHGV-0128966_37	PHROG	phrog_820	major tail protein	tail
UHGV-0128966_37	UniRef90	UniRef90_A0A8I1FBJ6	Phage tail protein	NA
UHGV-0128966_37	eggNOG-mapper	768486.EHR_02590	NA	NA
UHGV-0128966_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0128966_38	PHROG	phrog_341	major tail protein	tail
UHGV-0128966_38	UniRef90	UniRef90_UPI000A191C1D	phage tail protein	NA
UHGV-0128966_38	eggNOG-mapper	1486428.A0A097BY60_9CAUD	peptidase activity	NA
UHGV-0128966_38	Structural annotation	PF02368, MF_04116, TIGR04225, COG5492	NA	NA
UHGV-0128966_39	PHROG	phrog_1061	NA	unknown function
UHGV-0128966_39	eggNOG-mapper	1158601.I585_01150	NA	NA
UHGV-0128966_39	Structural annotation	PF10666	NA	NA
UHGV-0128966_40	PHROG	phrog_706	NA	unknown function
UHGV-0128966_40	UniRef90	UniRef90_A0A828QPX0	Bacteriophage Gp15 protein	NA
UHGV-0128966_40	eggNOG-mapper	1158601.I585_01149	Bacteriophage Gp15 protein	NA
UHGV-0128966_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0128966_40	Structural annotation	PF06854	NA	NA
UHGV-0128966_41	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0128966_41	UniRef90	UniRef90_A0A7Z8WRF8	Phage tail tape measure protein	NA
UHGV-0128966_41	eggNOG-mapper	1140003.I573_01294	phage tail tape measure protein	NA
UHGV-0128966_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0128966_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0128966_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0128966_41	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0128966_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0128966_42	UniRef90	UniRef90_V7ZMX6	Phage tail protein	NA
UHGV-0128966_42	eggNOG-mapper	1158601.I585_01147	phage tail	NA
UHGV-0128966_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0128966_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0128966_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0128966_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0128966_43	UniRef90	UniRef90_V7ZLX3	Peptidase S74 domain-containing protein	NA
UHGV-0128966_43	eggNOG-mapper	1158601.I585_01146	Prophage endopeptidase tail	NA
UHGV-0128966_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0128966_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0128966_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0128966_43	COG	COG4926	Phage-related protein	NA
UHGV-0128966_43	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0128966_44	PHROG	phrog_1665	NA	unknown function
UHGV-0128966_44	UniRef90	UniRef90_UPI001371D1DB	BppU family phage baseplate upper protein	NA
UHGV-0128966_44	eggNOG-mapper	673832.D2IYX9_9CAUD	NA	NA
UHGV-0128966_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0128966_45	PHROG	phrog_199	holin	lysis
UHGV-0128966_45	UniRef90	UniRef90_A0A097BY69	Holin	NA
UHGV-0128966_45	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0128966_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0128966_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0128966_46	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0128966_46	PHROG	phrog_670	endolysin	lysis
UHGV-0128966_46	UniRef90	UniRef90_A0A097BY70	Lysin	NA
UHGV-0128966_46	eggNOG-mapper	1486428.A0A097BY70_9CAUD	peptidoglycan catabolic process	NA
UHGV-0128966_46	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0128966_46	Structural annotation	PF01510, MF_04111, COG5632	NA	NA