UHGV-0129091

Genome information

Genome length 40,160 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129091
vOTU ID	vOTU-014802
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331118
BioSample	SAMN00715152
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	41
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	96.77
Jumbo phage	No

Genome content
Genome length	40,160 bps
GC content	37.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.45%
Average CDS length	628.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129091_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0129091_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0129091_1	UniRef90	UniRef90_A0A139MV76	Phage DNA invertase	NA
UHGV-0129091_1	eggNOG-mapper	1239381.K4JU73_9CAUD	Recombinase	NA
UHGV-0129091_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0129091_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0129091_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0129091_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0129091_2	PHROG	phrog_888	NA	unknown function
UHGV-0129091_2	UniRef90	UniRef90_A0A1I7JJ92	Short C-terminal domain-containing protein	NA
UHGV-0129091_2	eggNOG-mapper	1229517.AMFD01000025_gene920	Short C-terminal domain	NA
UHGV-0129091_2	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0129091_2	Structural annotation	PF15947	NA	NA
UHGV-0129091_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0129091_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0129091_3	UniRef90	UniRef90_UPI001F2E1938	helix-turn-helix domain-containing protein	NA
UHGV-0129091_3	eggNOG-mapper	1231377.C426_0586	Peptidase S24-like	NA
UHGV-0129091_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129091_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0129091_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0129091_3	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0129091_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0129091_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129091_4	UniRef90	UniRef90_A0A139R3Z3	Transcriptional regulator, Cro/CI family	NA
UHGV-0129091_4	eggNOG-mapper	1231377.C426_0588	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0129091_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129091_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129091_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0129091_5	Structural annotation	PF09202, COG1321	NA	NA
UHGV-0129091_6	PHROG	phrog_3624	NA	unknown function
UHGV-0129091_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0129091_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129091_8	UniRef90	UniRef90_A0A135YRB4	DNA-binding helix-turn-helix protein	NA
UHGV-0129091_8	eggNOG-mapper	996306.SSUR61_1532	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129091_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129091_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129091_8	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0129091_10	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0129091_10	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129091_10	UniRef90	UniRef90_A0A0C1K4G5	Phage-associated protein	NA
UHGV-0129091_10	eggNOG-mapper	423476.A3F622_9CAUD	calcium ion binding	NA
UHGV-0129091_10	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0129091_10	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0129091_10	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0129091_10	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0129091_11	PHROG	phrog_3819	NA	unknown function
UHGV-0129091_12	PHROG	phrog_1174	NA	unknown function
UHGV-0129091_12	UniRef90	UniRef90_A0A139R425	NA	NA
UHGV-0129091_12	eggNOG-mapper	768726.HMPREF9178_1079	NA	NA
UHGV-0129091_13	PHROG	phrog_17539	NA	unknown function
UHGV-0129091_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0129091_14	UniRef90	UniRef90_A0A4D6AY78	Single-stranded DNA-binding protein	NA
UHGV-0129091_14	eggNOG-mapper	1277892.M1IEW6_9CAUD	ERF superfamily	NA
UHGV-0129091_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0129091_14	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0129091_15	PHROG	phrog_674	NA	unknown function
UHGV-0129091_15	UniRef90	UniRef90_A0A412PL48	NA	NA
UHGV-0129091_15	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-0129091_15	Pfam	PF07083	NA	DUF1351
UHGV-0129091_15	Structural annotation	PF07083	NA	NA
UHGV-0129091_16	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0129091_16	UniRef90	UniRef90_A0A4D6AUH9	DNA-binding protein	NA
UHGV-0129091_16	eggNOG-mapper	1123309.AQYB01000014_gene915	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0129091_16	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0129091_16	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0129091_17	PHROG	phrog_4139	NA	unknown function
UHGV-0129091_17	UniRef90	UniRef90_C5WGX6	NA	NA
UHGV-0129091_17	Structural annotation	PF16857, MF_00273, NF001981	NA	NA
UHGV-0129091_19	PHROG	phrog_24930	NA	unknown function
UHGV-0129091_19	UniRef90	UniRef90_A0A1I7JSM8	Single-strand DNA-binding protein	NA
UHGV-0129091_20	PHROG	phrog_8736	NA	unknown function
UHGV-0129091_20	UniRef90	UniRef90_A0A098ANB9	Putative prophage protein	NA
UHGV-0129091_20	Structural annotation	NF041259	NA	NA
UHGV-0129091_21	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-0129091_21	UniRef90	UniRef90_S5RM53	C-5 cytosine-specific DNA methylase	NA
UHGV-0129091_21	eggNOG-mapper	1297534.CAUJ01000005_gene198	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0129091_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0129091_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0129091_21	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0129091_22	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0129091_22	UniRef90	UniRef90_A0A135YR96	BRO family protein	NA
UHGV-0129091_22	eggNOG-mapper	1282664.H354_07545	BRO family, N-terminal domain protein	NA
UHGV-0129091_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129091_22	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0129091_22	COG	COG3617	Prophage antirepressor	NA
UHGV-0129091_22	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0129091_25	PHROG	phrog_121	NA	unknown function
UHGV-0129091_25	UniRef90	UniRef90_UPI001F06C572	NA	NA
UHGV-0129091_25	eggNOG-mapper	1300150.EMQU_0780	NA	NA
UHGV-0129091_25	Pfam	PF07852	NA	DUF1642
UHGV-0129091_25	Structural annotation	PF07852	NA	NA
UHGV-0129091_26	PHROG	phrog_121	NA	unknown function
UHGV-0129091_26	UniRef90	UniRef90_UPI000E40C14C	NA	NA
UHGV-0129091_26	eggNOG-mapper	873448.STRPO_0272	NA	NA
UHGV-0129091_26	Pfam	PF07852	NA	DUF1642
UHGV-0129091_26	Structural annotation	PF07852	NA	NA
UHGV-0129091_28	PHROG	phrog_98	NA	unknown function
UHGV-0129091_28	UniRef90	UniRef90_UPI00115E9291	YopX family protein	NA
UHGV-0129091_28	eggNOG-mapper	1461246.X2KPG8_9VIRU	YopX protein	NA
UHGV-0129091_28	Pfam	PF09643	YopX protein	YopX
UHGV-0129091_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0129091_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0129091_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0129091_29	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129091_29	UniRef90	UniRef90_A0A1H9VA32	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0129091_29	eggNOG-mapper	1277892.M1IEV8_9CAUD	magnesium ion binding	NA
UHGV-0129091_29	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0129091_30	PHROG	phrog_29344	NA	unknown function
UHGV-0129091_32	PHROG	phrog_3511	NA	unknown function
UHGV-0129091_32	UniRef90	UniRef90_A0A139N2N4	NA	NA
UHGV-0129091_32	Structural annotation	TIGR01636	NA	NA
UHGV-0129091_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0129091_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0129091_33	UniRef90	UniRef90_A0A139MV51	Phage terminase, small subunit	NA
UHGV-0129091_33	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0129091_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0129091_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0129091_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0129091_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129091_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0129091_34	UniRef90	UniRef90_A0A135YR91	Phage terminase, large subunit, PBSX family	NA
UHGV-0129091_34	eggNOG-mapper	1123302.KB904167_gene514	Phage terminase, large subunit	NA
UHGV-0129091_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0129091_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0129091_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129091_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129091_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0129091_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0129091_35	UniRef90	UniRef90_A0A135YRH1	Phage minor capsid protein	NA
UHGV-0129091_35	eggNOG-mapper	1239381.K4JTJ5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0129091_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129091_35	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0129091_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0129091_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0129091_36	UniRef90	UniRef90_A0A135YRD6	Phage minor capsid protein 2	NA
UHGV-0129091_36	eggNOG-mapper	1123302.KB904167_gene516	Phage minor capsid protein 2	NA
UHGV-0129091_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0129091_36	Structural annotation	PF06152	NA	NA
UHGV-0129091_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0129091_37	UniRef90	UniRef90_A0A091C9U0	Scaffold protein	NA
UHGV-0129091_37	eggNOG-mapper	1239381.K4K7P1_9CAUD	Phage minor structural protein GP20	NA
UHGV-0129091_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0129091_37	Structural annotation	PF06810	NA	NA
UHGV-0129091_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0129091_38	UniRef90	UniRef90_A0A4D6ASP8	Main capsid protein	NA
UHGV-0129091_38	eggNOG-mapper	537874.B3GW03_9CAUD	NA	NA
UHGV-0129091_38	Structural annotation	PF20911	NA	NA
UHGV-0129091_40	PHROG	phrog_2910	NA	unknown function
UHGV-0129091_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129091_41	UniRef90	UniRef90_S5QY64	NA	NA
UHGV-0129091_41	eggNOG-mapper	1123302.KB904167_gene520	NA	NA
UHGV-0129091_42	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0129091_42	UniRef90	UniRef90_A0A139MVB4	Phage minor capsid protein	NA
UHGV-0129091_42	eggNOG-mapper	1123302.KB904167_gene521	Minor capsid protein	NA
UHGV-0129091_42	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0129091_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0129091_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129091_43	UniRef90	UniRef90_A0A1H9VAB7	Minor capsid protein	NA
UHGV-0129091_43	eggNOG-mapper	1214217.ALNF01000014_gene1371	Minor capsid protein	NA
UHGV-0129091_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0129091_43	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0129091_44	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0129091_44	UniRef90	UniRef90_A0A1I7JHB1	Bacteriophage minor capsid protein	NA
UHGV-0129091_44	eggNOG-mapper	1123302.KB904167_gene523	Minor capsid protein from bacteriophage	NA
UHGV-0129091_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0129091_44	Structural annotation	PF12691	NA	NA
UHGV-0129091_45	PHROG	phrog_820	major tail protein	tail
UHGV-0129091_45	UniRef90	UniRef90_S5RM31	Tail shaft protein	NA
UHGV-0129091_45	eggNOG-mapper	1123302.KB904167_gene524	NA	NA
UHGV-0129091_45	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0129091_46	PHROG	phrog_1061	NA	unknown function
UHGV-0129091_46	Structural annotation	PF10666	NA	NA
UHGV-0129091_47	PHROG	phrog_706	NA	unknown function
UHGV-0129091_47	UniRef90	UniRef90_A0A135YRP0	Bacteriophage Gp15 protein	NA
UHGV-0129091_47	eggNOG-mapper	1123302.KB904167_gene526	Bacteriophage Gp15 protein	NA
UHGV-0129091_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129091_47	Structural annotation	PF06854	NA	NA
UHGV-0129091_48	PHROG	phrog_1204	tail protein	tail
UHGV-0129091_48	UniRef90	UniRef90_A0A139MV81	Phage minor tail protein	NA
UHGV-0129091_48	eggNOG-mapper	1277892.M1HNU8_9CAUD	NA	NA
UHGV-0129091_48	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0129091_49	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0129091_49	UniRef90	UniRef90_A0A135YRT4	Phage tail component protein	NA
UHGV-0129091_49	eggNOG-mapper	1277892.M1I9T9_9CAUD	Phage tail protein	NA
UHGV-0129091_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0129091_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0129091_49	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0129091_50	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0129091_50	UniRef90	UniRef90_UPI001F2B44DB	antireceptor	NA
UHGV-0129091_50	eggNOG-mapper	682370.C9W9J0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0129091_50	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0129091_51	PHROG	phrog_372	tail protein	tail
UHGV-0129091_51	UniRef90	UniRef90_UPI001F22C360	NA	NA
UHGV-0129091_51	eggNOG-mapper	888049.HMPREF8578_0253	NA	NA
UHGV-0129091_51	Pfam	PF05895	NA	DUF859
UHGV-0129091_51	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0129091_52	PHROG	phrog_1060	NA	unknown function
UHGV-0129091_52	UniRef90	UniRef90_UPI001F3D31A8	NA	NA
UHGV-0129091_52	Pfam	PF07104	NA	DUF1366
UHGV-0129091_52	Structural annotation	PF07104	NA	NA
UHGV-0129091_53	PHROG	phrog_1567	NA	unknown function
UHGV-0129091_53	UniRef90	UniRef90_A0A139RNG9	NA	NA
UHGV-0129091_54	PHROG	phrog_1296	holin	lysis
UHGV-0129091_54	UniRef90	UniRef90_A0A139MV70	Phage holin	NA
UHGV-0129091_55	PHROG	phrog_962	holin	lysis
UHGV-0129091_55	UniRef90	UniRef90_UPI000E3FC055	phage holin	NA
UHGV-0129091_55	eggNOG-mapper	1035189.HMPREF9954_0325	Bacteriophage holin	NA
UHGV-0129091_55	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0129091_55	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0129091_55	COG	COG5546	NA	NA
UHGV-0129091_55	Structural annotation	PF04531, COG5546	NA	NA
UHGV-0129091_56	KOfam	K07273	acm; lysozyme	NA
UHGV-0129091_56	PHROG	phrog_291	endolysin	lysis
UHGV-0129091_56	UniRef90	UniRef90_A0A4D6AWV5	Lysozyme	NA
UHGV-0129091_56	eggNOG-mapper	764291.STRUR_0847	Glycosyl hydrolases family 25	NA
UHGV-0129091_56	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0129091_56	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0129091_56	Structural annotation	PF01183, PF19127, TIGR04035, COG5263, COG3757	NA	NA
UHGV-0129091_58	PHROG	phrog_1529	NA	unknown function
UHGV-0129091_58	UniRef90	UniRef90_UPI001F44A1FD	NA	NA
UHGV-0129091_58	eggNOG-mapper	1336234.JAGN01000025_gene751	NA	NA
UHGV-0129091_58	Structural annotation	PF12073, TIGR00739, COG4466	NA	NA
UHGV-0129091_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129091_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129091_60	UniRef90	UniRef90_A0A135YQ46	Single-stranded DNA-binding protein	NA
UHGV-0129091_60	eggNOG-mapper	525379.HMPREF0819_1526	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0129091_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129091_60	NCBIFam	NF005579.0	single-stranded DNA-binding protein	NA
UHGV-0129091_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129091_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129091_60	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA