UHGV-0129163

Genome information

Genome length 56,117 bps

CDS count 101

Completeness 95.21% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129163
vOTU ID	vOTU-060860
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325756
BioSample	SAMN00791933
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.86
Jumbo phage	No

Genome content
Genome length	56,117 bps
GC content	38.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	101
CDS density	87.90%
Average CDS length	491.76 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129163_2	Structural annotation	COG4446	NA	NA
UHGV-0129163_4	Structural annotation	PF19824	NA	NA
UHGV-0129163_5	PHROG	phrog_21026	NA	unknown function
UHGV-0129163_10	PHROG	phrog_9804	NA	unknown function
UHGV-0129163_10	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0129163_10	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0129163_10	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0129163_10	Structural annotation	PF11417	NA	NA
UHGV-0129163_11	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129163_11	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0129163_11	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0129163_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129163_11	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0129163_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0129163_12	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0129163_12	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0129163_12	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0129163_14	PHROG	phrog_6724	NA	unknown function
UHGV-0129163_14	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0129163_15	PHROG	phrog_19106	NA	unknown function
UHGV-0129163_15	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0129163_15	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0129163_15	Structural annotation	TIGR01453	NA	NA
UHGV-0129163_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0129163_16	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0129163_16	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0129163_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0129163_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0129163_16	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0129163_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0129163_17	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0129163_17	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0129163_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0129163_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0129163_17	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0129163_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129163_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129163_18	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0129163_18	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0129163_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129163_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129163_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129163_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129163_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0129163_21	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0129163_21	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0129163_24	PHROG	phrog_7711	NA	unknown function
UHGV-0129163_24	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0129163_25	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0129163_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0129163_25	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0129163_25	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0129163_25	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0129163_25	dbAPIS	APIS058	NA	NA
UHGV-0129163_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0129163_25	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0129163_27	PHROG	phrog_25456	NA	unknown function
UHGV-0129163_28	KOfam	K06940	NA	NA
UHGV-0129163_28	PHROG	phrog_32498	NA	unknown function
UHGV-0129163_28	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0129163_28	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0129163_28	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0129163_29	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0129163_29	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0129163_29	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0129163_29	Pfam	PF03837	RecT family	RecT
UHGV-0129163_29	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0129163_30	PHROG	phrog_4433	NA	unknown function
UHGV-0129163_30	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0129163_30	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0129163_30	Structural annotation	NF007410	NA	NA
UHGV-0129163_31	PHROG	phrog_2164	NA	unknown function
UHGV-0129163_32	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0129163_32	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129163_32	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0129163_32	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0129163_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0129163_32	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0129163_35	UniRef90	UniRef90_A0A1L8RDA1	LysM domain-containing protein	NA
UHGV-0129163_35	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0129163_35	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0129163_36	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0129163_36	UniRef90	UniRef90_UPI001BED9A05	ORF6C domain-containing protein	NA
UHGV-0129163_36	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0129163_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129163_36	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0129163_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0129163_36	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0129163_37	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-0129163_37	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0129163_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129163_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129163_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0129163_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0129163_38	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0129163_38	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0129163_38	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0129163_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129163_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129163_38	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0129163_39	PHROG	phrog_3845	NA	unknown function
UHGV-0129163_39	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0129163_42	PHROG	phrog_1419	tail protein	tail
UHGV-0129163_42	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0129163_43	PHROG	phrog_6616	tail protein	tail
UHGV-0129163_43	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0129163_43	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0129163_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0129163_43	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0129163_44	PHROG	phrog_1194	NA	unknown function
UHGV-0129163_44	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0129163_44	Pfam	PF20458	NA	DUF6711
UHGV-0129163_44	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0129163_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0129163_45	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0129163_45	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0129163_45	COG	COG1511	NA	NA
UHGV-0129163_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0129163_46	PHROG	phrog_291	endolysin	lysis
UHGV-0129163_46	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0129163_46	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0129163_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0129163_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0129163_46	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0129163_49	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0129163_49	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0129163_50	Structural annotation	PF05657	NA	NA
UHGV-0129163_51	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0129163_51	AcrCatalog	cluster_24841	NA	NA
UHGV-0129163_52	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0129163_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0129163_53	PHROG	phrog_1129	holin	lysis
UHGV-0129163_53	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0129163_53	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0129163_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0129163_53	Structural annotation	PF06946	NA	NA
UHGV-0129163_54	PHROG	phrog_4105	NA	unknown function
UHGV-0129163_54	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0129163_55	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0129163_56	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0129163_56	Structural annotation	PF21169	NA	NA
UHGV-0129163_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0129163_57	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0129163_57	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0129163_57	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0129163_57	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0129163_58	PHROG	phrog_909	major head protein	head and packaging
UHGV-0129163_58	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0129163_58	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0129163_59	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0129163_60	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0129163_60	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0129163_60	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0129163_60	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129163_60	COG	COG2369	NA	NA
UHGV-0129163_60	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0129163_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129163_61	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0129163_61	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0129163_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129163_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0129163_62	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129163_62	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0129163_62	Structural annotation	PF02996	NA	NA
UHGV-0129163_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0129163_63	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0129163_63	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0129163_63	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0129163_63	COG	COG5410	NA	NA
UHGV-0129163_63	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0129163_64	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0129163_64	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0129163_64	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-0129163_64	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0129163_64	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0129163_64	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0129163_64	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0129163_70	PHROG	phrog_25639	NA	unknown function
UHGV-0129163_70	eggNOG-mapper	585501.HMPREF6123_0841	NA	NA
UHGV-0129163_72	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0129163_73	Structural annotation	PF04466	NA	NA
UHGV-0129163_76	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0129163_76	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0129163_80	PHROG	phrog_236	nucleotide kinase	other
UHGV-0129163_80	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0129163_80	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0129163_80	Pfam	PF11753	NA	DUF3310
UHGV-0129163_80	Structural annotation	PF11753	NA	NA
UHGV-0129163_81	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0129163_81	Structural annotation	PF16677	NA	NA
UHGV-0129163_84	Structural annotation	PF20082	NA	NA
UHGV-0129163_85	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0129163_85	UniRef90	UniRef90_A0A415I2L4	XRE family transcriptional regulator	NA
UHGV-0129163_85	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0129163_85	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0129163_85	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0129163_95	PHROG	phrog_1233	NA	unknown function
UHGV-0129163_95	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0129163_96	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0129163_97	PHROG	phrog_20016	NA	unknown function
UHGV-0129163_97	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0129163_97	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0129163_97	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0129163_98	PHROG	phrog_16490	NA	unknown function
UHGV-0129163_98	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0129163_99	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0129163_100	PHROG	phrog_21718	NA	unknown function
UHGV-0129163_100	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0129163_100	Structural annotation	NF033819	NA	NA