UHGV-0129164

Genome information

Genome length 28,938 bps

CDS count 35

Completeness 60.14% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129164
vOTU ID	vOTU-030507
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325752
BioSample	SAMN00791933
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.45
Jumbo phage	No

Genome content
Genome length	28,938 bps
GC content	49.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.00%
Average CDS length	762.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129164_1	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0129164_1	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129164_1	UniRef90	UniRef90_A0A3C1IQM4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0129164_1	eggNOG-mapper	521098.Aaci_0495	Endodeoxyribonuclease RusA	NA
UHGV-0129164_1	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0129164_1	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0129164_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129164_2	UniRef90	UniRef90_A0A410Q7S7	NA	NA
UHGV-0129164_2	eggNOG-mapper	1392487.JIAD01000001_gene536	sigma factor activity	NA
UHGV-0129164_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0129164_2	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0129164_3	eggNOG-mapper	568816.Acin_1213	NA	NA
UHGV-0129164_5	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0129164_5	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0129164_5	UniRef90	UniRef90_A0A7W6S2H6	Phage terminase Nu1 subunit (DNA packaging protein)	NA
UHGV-0129164_5	eggNOG-mapper	469381.Dpep_0026	transposase activity	NA
UHGV-0129164_5	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0129164_6	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0129164_6	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0129164_6	UniRef90	UniRef90_A0A3C1INY8	Terminase	NA
UHGV-0129164_6	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0129164_6	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0129164_6	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0129164_6	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0129164_6	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0129164_8	PHROG	phrog_21	portal protein	head and packaging
UHGV-0129164_8	UniRef90	UniRef90_A0A3C1INQ6	Phage portal protein	NA
UHGV-0129164_8	eggNOG-mapper	935948.KE386495_gene1189	Phage portal protein, lambda family	NA
UHGV-0129164_8	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0129164_8	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0129164_8	COG	COG5511	Phage capsid protein	NA
UHGV-0129164_8	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0129164_9	KOfam	K06904	NA	NA
UHGV-0129164_9	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0129164_9	UniRef90	UniRef90_A0A3C1INU1	Mu-like_gpT domain-containing protein	NA
UHGV-0129164_9	eggNOG-mapper	883156.HMPREF9282_01239	Caudovirus prohead protease	NA
UHGV-0129164_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0129164_9	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0129164_9	COG	COG3087	Cell division protein FtsN	NA
UHGV-0129164_9	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0129164_10	PHROG	phrog_122	head decoration	head and packaging
UHGV-0129164_10	UniRef90	UniRef90_A0A3C1IQP2	DNA breaking-rejoining protein	NA
UHGV-0129164_10	eggNOG-mapper	318161.Sden_3248	NA	NA
UHGV-0129164_10	Pfam	PF09956	NA	DUF2190
UHGV-0129164_10	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0129164_10	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0129164_11	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0129164_12	PHROG	phrog_222	tail protein	tail
UHGV-0129164_12	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0129164_12	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0129164_13	PHROG	phrog_17431	NA	unknown function
UHGV-0129164_13	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0129164_14	PHROG	phrog_290	minor tail protein	tail
UHGV-0129164_14	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0129164_14	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0129164_14	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0129164_14	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0129164_17	PHROG	phrog_30973	NA	unknown function
UHGV-0129164_17	UniRef90	UniRef90_UPI001032C687	phage tail tape measure protein	NA
UHGV-0129164_17	eggNOG-mapper	484770.UFO1_2454	nuclear chromosome segregation	NA
UHGV-0129164_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0129164_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129164_18	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0129164_18	eggNOG-mapper	1280706.AUJE01000003_gene2251	NA	NA
UHGV-0129164_18	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0129164_19	PHROG	phrog_18	minor tail protein	tail
UHGV-0129164_19	UniRef90	UniRef90_UPI000405B9EE	NA	NA
UHGV-0129164_19	eggNOG-mapper	1280706.AUJE01000003_gene2250	Phage minor tail protein L	NA
UHGV-0129164_19	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0129164_19	COG	COG4672	Phage tail protein	NA
UHGV-0129164_19	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0129164_20	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0129164_20	PHROG	phrog_329	minor tail protein	tail
UHGV-0129164_20	UniRef90	UniRef90_A0A3C1IQP9	NlpC/P60 domain-containing protein	NA
UHGV-0129164_20	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-0129164_20	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0129164_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0129164_20	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0129164_21	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0129164_21	UniRef90	UniRef90_A0A3C1IPA1	Phage-tail_3 domain-containing protein	NA
UHGV-0129164_21	eggNOG-mapper	1280706.AUJE01000003_gene2248	cellulase activity	NA
UHGV-0129164_21	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0129164_21	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0129164_21	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0129164_21	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-0129164_22	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0129164_22	UniRef90	UniRef90_A0A6C0CJK8	Mtd_N domain-containing protein (Fragment)	NA
UHGV-0129164_22	eggNOG-mapper	753085.F4YCT2_9CAUD	NA	NA
UHGV-0129164_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0129164_25	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0129164_25	Structural annotation	PF14301	NA	NA
UHGV-0129164_26	PHROG	phrog_1084	NA	unknown function
UHGV-0129164_26	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA
UHGV-0129164_26	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0129164_27	PHROG	phrog_31538	NA	unknown function
UHGV-0129164_27	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0129164_28	PHROG	phrog_13589	NA	unknown function
UHGV-0129164_28	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0129164_29	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0129164_31	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0129164_31	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0129164_31	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0129164_31	Pfam	PF14301	NA	DUF4376
UHGV-0129164_31	Structural annotation	PF14301, COG1382	NA	NA
UHGV-0129164_32	KOfam	K14059	int; integrase	NA
UHGV-0129164_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0129164_32	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0129164_32	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0129164_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129164_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129164_32	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0129164_33	PHROG	phrog_199	holin	lysis
UHGV-0129164_33	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0129164_33	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0129164_33	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0129164_33	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0129164_34	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0129164_34	Structural annotation	PF21277	NA	NA