UHGV-0129171

Genome information

Genome length 32,038 bps

CDS count 46

Completeness 68.19% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129171
vOTU ID	vOTU-030506
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325779
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.06
Jumbo phage	No

Genome content
Genome length	32,038 bps
GC content	48.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.44%
Average CDS length	631.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129171_1	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0129171_1	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129171_1	UniRef90	UniRef90_A0A3C1IQM4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0129171_1	eggNOG-mapper	521098.Aaci_0495	Endodeoxyribonuclease RusA	NA
UHGV-0129171_1	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0129171_1	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0129171_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129171_2	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0129171_2	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0129171_2	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0129171_3	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0129171_3	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0129171_3	UniRef90	UniRef90_A0A139CFP9	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0129171_3	eggNOG-mapper	1262914.BN533_00789	NA	NA
UHGV-0129171_3	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0129171_3	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0129171_4	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0129171_4	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0129171_4	UniRef90	UniRef90_UPI000F0C09AB	phage terminase large subunit family protein	NA
UHGV-0129171_4	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0129171_4	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0129171_4	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0129171_4	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0129171_4	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0129171_4	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0129171_5	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0129171_5	UniRef90	UniRef90_UPI000D1063A5	NA	NA
UHGV-0129171_5	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-0129171_5	Pfam	PF19645	NA	DUF6148
UHGV-0129171_5	Structural annotation	PF19645	NA	NA
UHGV-0129171_6	PHROG	phrog_21	portal protein	head and packaging
UHGV-0129171_6	UniRef90	UniRef90_A0A1M6SL22	Phage portal protein, lambda family	NA
UHGV-0129171_6	eggNOG-mapper	1262914.BN533_00784	Phage portal protein	NA
UHGV-0129171_6	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0129171_6	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0129171_6	COG	COG5511	Phage capsid protein	NA
UHGV-0129171_6	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0129171_7	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0129171_7	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0129171_7	UniRef90	UniRef90_UPI000F0C7B06	Clp protease ClpP	NA
UHGV-0129171_7	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0129171_7	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0129171_7	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0129171_7	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0129171_8	PHROG	phrog_49	head decoration	head and packaging
UHGV-0129171_8	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-0129171_8	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-0129171_8	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0129171_8	Structural annotation	PF02924	NA	NA
UHGV-0129171_9	PHROG	phrog_29	major head protein	head and packaging
UHGV-0129171_9	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-0129171_9	eggNOG-mapper	1273103.NM10_03136	Phage major capsid protein E	NA
UHGV-0129171_9	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0129171_9	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0129171_10	Structural annotation	PF10208	NA	NA
UHGV-0129171_11	PHROG	phrog_2551	minor tail protein	tail
UHGV-0129171_11	UniRef90	UniRef90_R6I9C8	Sugar ABC transporter ATP-binding protein	NA
UHGV-0129171_11	eggNOG-mapper	1262914.BN533_01003	Product inferred by homology to UniProt	NA
UHGV-0129171_11	Structural annotation	PF13856	NA	NA
UHGV-0129171_12	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0129171_12	UniRef90	UniRef90_A0A259U590	Prophage minor tail protein Z	NA
UHGV-0129171_12	eggNOG-mapper	1262914.BN533_00997	Prophage minor tail protein Z (GPZ)	NA
UHGV-0129171_12	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0129171_12	Structural annotation	PF06763	NA	NA
UHGV-0129171_13	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0129171_13	eggNOG-mapper	1262914.BN533_00996	NA	NA
UHGV-0129171_13	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0129171_14	PHROG	phrog_4089	NA	unknown function
UHGV-0129171_14	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0129171_15	KOfam	K06907	NA	NA
UHGV-0129171_15	PHROG	phrog_23	tail sheath	tail
UHGV-0129171_15	UniRef90	UniRef90_A0A2A2IKV4	Phage tail protein	NA
UHGV-0129171_15	eggNOG-mapper	572547.Amico_1114	tail sheath protein	NA
UHGV-0129171_15	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0129171_15	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0129171_16	KOfam	K06908	NA	NA
UHGV-0129171_16	PHROG	phrog_55	head closure	connector
UHGV-0129171_16	UniRef90	UniRef90_R6J7N4	Phage major tail tube protein	NA
UHGV-0129171_16	eggNOG-mapper	1262914.BN533_01373	tail tube protein	NA
UHGV-0129171_16	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0129171_16	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0129171_16	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0129171_17	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0129171_17	UniRef90	UniRef90_R6ILQ4	Mu-like prophage FluMu protein gp41	NA
UHGV-0129171_17	eggNOG-mapper	1262914.BN533_01372	NA	NA
UHGV-0129171_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0129171_19	UniRef90	UniRef90_UPI000F0C0B13	phage tail tape measure protein	NA
UHGV-0129171_19	eggNOG-mapper	864563.HMPREF9166_0558	Phage tail tape measure protein, TP901 family	NA
UHGV-0129171_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0129171_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0129171_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0129171_19	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0129171_20	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0129171_20	UniRef90	UniRef90_UPI000E54237F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0129171_20	eggNOG-mapper	999413.HMPREF1094_00480	IrrE N-terminal-like domain	NA
UHGV-0129171_20	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0129171_20	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0129171_20	Structural annotation	PF06114, NF038139, COG2856	NA	NA
UHGV-0129171_21	eggNOG-mapper	1121333.JMLH01000023_gene2074	NA	NA
UHGV-0129171_22	UniRef90	UniRef90_A0A6G3M2L8	CopG family transcriptional regulator	NA
UHGV-0129171_22	eggNOG-mapper	1122918.KB907267_gene2	NA	NA
UHGV-0129171_22	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0129171_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0129171_23	PHROG	phrog_7940	NA	unknown function
UHGV-0129171_23	UniRef90	UniRef90_A0A412X6G4	Toxin Bro	NA
UHGV-0129171_23	eggNOG-mapper	546271.Selsp_1341	BRO family, N-terminal domain	NA
UHGV-0129171_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129171_23	COG	COG3617	Prophage antirepressor	NA
UHGV-0129171_23	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0129171_25	KOfam	K06905	NA	NA
UHGV-0129171_25	PHROG	phrog_52	tail protein	tail
UHGV-0129171_25	UniRef90	UniRef90_UPI001CD5459F	transcriptional regulator	NA
UHGV-0129171_25	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0129171_25	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0129171_25	COG	COG3500	NA	NA
UHGV-0129171_25	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0129171_26	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0129171_26	UniRef90	UniRef90_A0A6N7VMZ2	Phage baseplate assembly protein V	NA
UHGV-0129171_26	eggNOG-mapper	1262914.BN533_01719	Phage baseplate assembly protein V	NA
UHGV-0129171_26	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0129171_26	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0129171_26	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0129171_27	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0129171_27	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-0129171_27	eggNOG-mapper	1262914.BN533_01715	PAAR repeat-containing protein	NA
UHGV-0129171_27	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0129171_27	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0129171_27	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0129171_28	KOfam	K06906	NA	NA
UHGV-0129171_28	PHROG	phrog_76	tail protein	tail
UHGV-0129171_28	UniRef90	UniRef90_A0A6N7W1P7	Phage tail protein	NA
UHGV-0129171_28	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0129171_28	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0129171_28	COG	COG3499	NA	NA
UHGV-0129171_28	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0129171_29	KOfam	K06903	NA	NA
UHGV-0129171_29	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0129171_29	UniRef90	UniRef90_A0A348AJ14	Gene 25-like lysozyme	NA
UHGV-0129171_29	eggNOG-mapper	572547.Amico_1105	GPW Gp25 family protein	NA
UHGV-0129171_29	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0129171_29	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0129171_29	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0129171_30	PHROG	phrog_6	baseplate protein	tail
UHGV-0129171_30	UniRef90	UniRef90_A0A2A2IKV6	Baseplate protein	NA
UHGV-0129171_30	eggNOG-mapper	1262914.BN533_01712	Baseplate J-like protein	NA
UHGV-0129171_30	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0129171_30	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0129171_30	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0129171_31	PHROG	phrog_14404	baseplate protein	tail
UHGV-0129171_31	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-0129171_31	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0129171_31	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0129171_31	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0129171_31	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0129171_31	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0129171_32	eggNOG-mapper	568816.Acin_1955	NA	NA
UHGV-0129171_32	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0129171_33	PHROG	phrog_31538	NA	unknown function
UHGV-0129171_33	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0129171_34	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0129171_34	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0129171_34	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-0129171_34	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0129171_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0129171_34	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0129171_35	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0129171_36	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0129171_36	eggNOG-mapper	1009370.ALO_01679	tail collar domain protein	NA
UHGV-0129171_36	COG	COG4675	Phage tail collar domain	NA
UHGV-0129171_36	Structural annotation	PF09458	NA	NA
UHGV-0129171_37	PHROG	phrog_2837	tail protein	tail
UHGV-0129171_37	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0129171_37	Pfam	PF14301	NA	DUF4376
UHGV-0129171_37	Structural annotation	PF14301	NA	NA
UHGV-0129171_38	KOfam	K14059	int; integrase	NA
UHGV-0129171_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0129171_38	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0129171_38	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0129171_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129171_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129171_38	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0129171_39	PHROG	phrog_13589	NA	unknown function
UHGV-0129171_39	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0129171_40	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0129171_41	PHROG	phrog_4105	NA	unknown function
UHGV-0129171_41	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0129171_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0129171_43	PHROG	phrog_435	endolysin	lysis
UHGV-0129171_43	UniRef90	UniRef90_UPI000F0CFF53	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129171_43	eggNOG-mapper	1111454.HMPREF1250_0942	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129171_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0129171_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129171_43	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0129171_45	PHROG	phrog_21372	NA	unknown function
UHGV-0129171_45	UniRef90	UniRef90_A0A3C1IPT9	NA	NA
UHGV-0129171_45	eggNOG-mapper	1209989.TepiRe1_1922	NA	NA
UHGV-0129171_45	Pfam	PF11148	NA	DUF2922
UHGV-0129171_46	KOfam	K01286	E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]	NA
UHGV-0129171_46	PHROG	phrog_382	minor tail protein with lysin activity	tail
UHGV-0129171_46	UniRef90	UniRef90_A0A6A8VAU0	Serine hydrolase	NA
UHGV-0129171_46	eggNOG-mapper	552398.HMPREF0866_01207	Beta-lactamase class C	NA
UHGV-0129171_46	Pfam	PF00144	Beta-lactamase	Beta-lactamase
UHGV-0129171_46	COG	COG1680	CubicO group peptidase, beta-lactamase class C family	NA