UHGV-0129201

Genome information

Genome length 27,373 bps

CDS count 43

Completeness 59.13% (medium-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129201
vOTU ID	vOTU-018502
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_316200
BioSample	SAMN00998645
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.52
Jumbo phage	No

Genome content
Genome length	27,373 bps
GC content	29.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.98%
Average CDS length	586.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129201_1	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0129201_1	PHROG	phrog_8460	tail fiber protein	tail
UHGV-0129201_1	UniRef90	UniRef90_UPI001C68E07F	SGNH/GDSL hydrolase family protein	NA
UHGV-0129201_1	eggNOG-mapper	1484479.DI14_04675	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0129201_1	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0129201_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0129201_2	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0129201_3	PHROG	phrog_3558	tail protein	tail
UHGV-0129201_3	UniRef90	UniRef90_A0A1C6KQ97	Phage-related protein	NA
UHGV-0129201_3	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0129201_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0129201_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0129201_3	COG	COG4926	Phage-related protein	NA
UHGV-0129201_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0129201_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0129201_4	UniRef90	UniRef90_A0A1C6KPN3	Phage-related protein	NA
UHGV-0129201_4	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-0129201_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0129201_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0129201_4	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0129201_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0129201_5	UniRef90	UniRef90_A0A1C6KPB3	Phage-related protein	NA
UHGV-0129201_5	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0129201_5	COG	COG1511	NA	NA
UHGV-0129201_6	UniRef90	UniRef90_UPI001C0BFF51	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0129201_6	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0129201_6	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0129201_7	PHROG	phrog_706	NA	unknown function
UHGV-0129201_7	UniRef90	UniRef90_A0A1C6KPE4	Bacteriophage Gp15 protein	NA
UHGV-0129201_7	eggNOG-mapper	545697.HMPREF0216_02857	Bacteriophage Gp15 protein	NA
UHGV-0129201_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129201_7	Structural annotation	PF06854	NA	NA
UHGV-0129201_8	PHROG	phrog_4450	NA	unknown function
UHGV-0129201_8	UniRef90	UniRef90_UPI001C60AEBB	AP endonuclease	NA
UHGV-0129201_8	eggNOG-mapper	573061.Clocel_3535	NA	NA
UHGV-0129201_8	Pfam	PF20378	NA	DUF6673
UHGV-0129201_8	Structural annotation	PF20378	NA	NA
UHGV-0129201_9	PHROG	phrog_3099	NA	unknown function
UHGV-0129201_9	eggNOG-mapper	545697.HMPREF0216_02855	NA	NA
UHGV-0129201_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129201_10	PHROG	phrog_3266	tail completion	connector
UHGV-0129201_10	UniRef90	UniRef90_UPI001F261AF5	chloramphenicol resistance protein	NA
UHGV-0129201_10	eggNOG-mapper	1499683.CCFF01000017_gene2570	NA	NA
UHGV-0129201_10	Structural annotation	PF12691	NA	NA
UHGV-0129201_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129201_11	UniRef90	UniRef90_A0A1C6KPK4	Minor capsid protein	NA
UHGV-0129201_11	eggNOG-mapper	1499683.CCFF01000017_gene2571	Minor capsid protein	NA
UHGV-0129201_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0129201_12	PHROG	phrog_3366	NA	unknown function
UHGV-0129201_12	eggNOG-mapper	1540257.JQMW01000013_gene739	NA	NA
UHGV-0129201_12	Pfam	PF20536	NA	DUF6751
UHGV-0129201_12	Structural annotation	PF20536	NA	NA
UHGV-0129201_13	UniRef90	UniRef90_UPI0013C967CA	phage head-tail connector protein	NA
UHGV-0129201_13	eggNOG-mapper	1540257.JQMW01000013_gene740	NA	NA
UHGV-0129201_14	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0129201_14	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0129201_14	UniRef90	UniRef90_A0A174D6L8	Collagen triple helix repeat (20 copies)	NA
UHGV-0129201_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0129201_15	PHROG	phrog_29	major head protein	head and packaging
UHGV-0129201_15	UniRef90	UniRef90_A0A1C6KXX0	Phage major capsid protein E	NA
UHGV-0129201_15	eggNOG-mapper	1280692.AUJL01000004_gene846	Phage major capsid protein E	NA
UHGV-0129201_15	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0129201_15	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0129201_16	PHROG	phrog_909	major head protein	head and packaging
UHGV-0129201_16	UniRef90	UniRef90_UPI001D2572A1	head decoration protein	NA
UHGV-0129201_16	eggNOG-mapper	1280692.AUJL01000004_gene847	NA	NA
UHGV-0129201_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0129201_17	UniRef90	UniRef90_UPI00097FD426	NA	NA
UHGV-0129201_17	eggNOG-mapper	1280692.AUJL01000004_gene848	NA	NA
UHGV-0129201_17	Pfam	PF14265	NA	DUF4355
UHGV-0129201_17	Structural annotation	PF14265	NA	NA
UHGV-0129201_18	PHROG	phrog_23707	NA	unknown function
UHGV-0129201_18	eggNOG-mapper	1519439.JPJG01000059_gene1912	NA	NA
UHGV-0129201_18	Structural annotation	PF08325, COG4900	NA	NA
UHGV-0129201_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0129201_20	UniRef90	UniRef90_UPI00097FE5D2	minor capsid protein	NA
UHGV-0129201_20	eggNOG-mapper	1499683.CCFF01000017_gene2578	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0129201_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129201_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0129201_20	COG	COG2369	NA	NA
UHGV-0129201_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0129201_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129201_21	UniRef90	UniRef90_UPI00189BFC5F	phage portal protein	NA
UHGV-0129201_21	eggNOG-mapper	1280692.AUJL01000004_gene853	portal protein, SPP1 Gp6-like	NA
UHGV-0129201_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129201_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0129201_22	PHROG	phrog_14112	NA	unknown function
UHGV-0129201_22	eggNOG-mapper	1280692.AUJL01000004_gene854	TIGRFAM Phage	NA
UHGV-0129201_22	COG	COG5362	Phage terminase large subunit	NA
UHGV-0129201_22	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0129201_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0129201_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129201_23	UniRef90	UniRef90_UPI00098B0485	HNH endonuclease	NA
UHGV-0129201_23	eggNOG-mapper	243164.DET1094	endonuclease activity	NA
UHGV-0129201_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0129201_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129201_24	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0129201_24	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0129201_24	UniRef90	UniRef90_UPI00030921DF	recombinase family protein	NA
UHGV-0129201_24	eggNOG-mapper	1499689.CCNN01000004_gene313	Resolvase, N terminal domain	NA
UHGV-0129201_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0129201_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0129201_24	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0129201_25	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0129201_25	UniRef90	UniRef90_A0A1C6KNX5	Helix-turn-helix domain of resolvase	NA
UHGV-0129201_25	eggNOG-mapper	748727.CLJU_c36480	Helix-turn-helix domain of resolvase	NA
UHGV-0129201_25	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0129201_25	Structural annotation	PF13384, COG3677	NA	NA
UHGV-0129201_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129201_26	UniRef90	UniRef90_A0A1C6KP07	Phage transcriptional regulator, RinA family	NA
UHGV-0129201_26	eggNOG-mapper	1345695.CLSA_c30010	sigma factor activity	NA
UHGV-0129201_26	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0129201_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0129201_26	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0129201_27	PHROG	phrog_4072	NA	unknown function
UHGV-0129201_27	UniRef90	UniRef90_G9B201	Gp250	NA
UHGV-0129201_27	eggNOG-mapper	545697.HMPREF0216_02811	NA	NA
UHGV-0129201_28	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0129201_28	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0129201_28	UniRef90	UniRef90_UPI001F40D267	dUTP diphosphatase	NA
UHGV-0129201_28	eggNOG-mapper	1582152.A0A0A8WIQ1_9CAUD	dUTPase	NA
UHGV-0129201_28	Pfam	PF00692	dUTPase	dUTPase
UHGV-0129201_28	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0129201_28	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0129201_32	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0129201_32	PHROG	phrog_26824	NA	unknown function
UHGV-0129201_32	UniRef90	UniRef90_A0A1C6KP16	DNA primase	NA
UHGV-0129201_32	eggNOG-mapper	536233.CLO_0520	DNA primase	NA
UHGV-0129201_32	PADLOC	drt-cluster192	DRT	DRT
UHGV-0129201_32	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0129201_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0129201_32	Structural annotation	PF01807, PF06048, PF19898, MF_00974, NF005477, COG5519, COG0358	NA	NA
UHGV-0129201_34	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0129201_34	UniRef90	UniRef90_A0A1C6KP06	ERCC4 domain-containing protein	NA
UHGV-0129201_34	eggNOG-mapper	1443122.Z958_05760	ERCC4 domain	NA
UHGV-0129201_34	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0129201_34	Structural annotation	PF02732, NF040956	NA	NA
UHGV-0129201_39	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-0129201_41	KOfam	K06899	ndpA; nucleoid-associated protein	NA
UHGV-0129201_41	PHROG	phrog_1974	NA	unknown function
UHGV-0129201_41	UniRef90	UniRef90_UPI0006C6D39C	nucleoid-associated protein	NA
UHGV-0129201_41	eggNOG-mapper	1414720.CBYM010000002_gene581	37-kD nucleoid-associated bacterial protein	NA
UHGV-0129201_41	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0129201_41	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0129201_41	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0129201_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129201_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129201_42	UniRef90	UniRef90_UPI0006C358CD	single-stranded DNA-binding protein	NA
UHGV-0129201_42	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-0129201_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129201_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129201_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129201_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129201_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA