UHGV-0129238

Genome information

Genome length 38,263 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129238
vOTU ID	vOTU-045913
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326858
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.42
Jumbo phage	No

Genome content
Genome length	38,263 bps
GC content	56.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	95.35%
Average CDS length	556.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129238_2	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129238_2	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0129238_2	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0129238_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0129238_13	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0129238_13	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0129238_19	Pfam	PF03965	Penicillinase repressor	Penicillinase_R
UHGV-0129238_20	PHROG	phrog_8660	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129238_20	UniRef90	UniRef90_UPI001330C608	HNH endonuclease	NA
UHGV-0129238_20	eggNOG-mapper	861530.ALOZ01000074_gene957	HNH endonuclease	NA
UHGV-0129238_20	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0129238_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129238_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0129238_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0129238_21	UniRef90	UniRef90_A0A494REL6	Cytosine-specific methyltransferase	NA
UHGV-0129238_21	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0129238_21	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0129238_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0129238_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0129238_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0129238_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0129238_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0129238_24	UniRef90	UniRef90_A0A2V2F4S0	Class V aminotransferase	NA
UHGV-0129238_24	eggNOG-mapper	398512.JQKC01000005_gene5430	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0129238_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0129238_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0129238_25	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0129238_25	UniRef90	UniRef90_A0A6M3MBE5	Putative radical SAM superfamily protein	NA
UHGV-0129238_25	eggNOG-mapper	573061.Clocel_3562	NA	NA
UHGV-0129238_25	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0129238_25	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-0129238_26	PHROG	phrog_872	NA	unknown function
UHGV-0129238_26	UniRef90	UniRef90_UPI001175843E	NA	NA
UHGV-0129238_26	eggNOG-mapper	278197.PEPE_0778	NA	NA
UHGV-0129238_26	Pfam	PF11195	NA	DUF2829
UHGV-0129238_26	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0129238_34	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0129238_34	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0129238_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129238_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0129238_38	UniRef90	UniRef90_A0A843DZZ3	Terminase family protein	NA
UHGV-0129238_38	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0129238_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0129238_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129238_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129238_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129238_39	UniRef90	UniRef90_A0A843EA50	Phage portal protein (Fragment)	NA
UHGV-0129238_39	eggNOG-mapper	1235800.C819_00489	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0129238_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129238_39	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0129238_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0129238_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0129238_40	UniRef90	UniRef90_UPI001AE33552	minor capsid protein	NA
UHGV-0129238_40	eggNOG-mapper	1226322.HMPREF1545_04053	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0129238_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129238_40	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0129238_40	COG	COG2369	NA	NA
UHGV-0129238_40	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0129238_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0129238_41	Pfam	PF14265	NA	DUF4355
UHGV-0129238_41	Structural annotation	PF14265	NA	NA
UHGV-0129238_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0129238_42	UniRef90	UniRef90_A0A3P6K1X9	Lj928 prophage protein	NA
UHGV-0129238_42	eggNOG-mapper	86416.Clopa_2795	NA	NA
UHGV-0129238_42	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129238_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0129238_43	Structural annotation	TIGR01560	NA	NA
UHGV-0129238_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0129238_45	UniRef90	UniRef90_A0A139Q9C5	NA	NA
UHGV-0129238_45	eggNOG-mapper	1054460.SPPN_00195	NA	NA
UHGV-0129238_47	PHROG	phrog_158	major tail protein	tail
UHGV-0129238_47	eggNOG-mapper	457421.CBFG_03491	serine threonine protein kinase	NA
UHGV-0129238_47	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0129238_47	COG	COG0810	Periplasmic protein TonB, links inner and outer membranes	NA
UHGV-0129238_50	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0129238_50	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0129238_50	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0129238_50	COG	COG1511	NA	NA
UHGV-0129238_51	PHROG	phrog_1194	NA	unknown function
UHGV-0129238_52	PHROG	phrog_13879	NA	unknown function
UHGV-0129238_53	Pfam	PF11611	NA	DUF4352
UHGV-0129238_54	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0129238_54	PHROG	phrog_11157	NA	unknown function
UHGV-0129238_54	UniRef90	UniRef90_A0A843IMB0	Ig-like domain repeat protein	NA
UHGV-0129238_54	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0129238_54	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0129238_54	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0129238_54	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0129238_54	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0129238_55	Pfam	PF13754	NA	Big_3_4
UHGV-0129238_59	PHROG	phrog_5302	tail protein	tail
UHGV-0129238_59	eggNOG-mapper	1151292.QEW_0671	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0129238_59	Pfam	PF17802	Prealbumin-like fold domain	SpaA
UHGV-0129238_59	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0129238_59	Structural annotation	PF03781, COG1262	NA	NA
UHGV-0129238_60	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0129238_60	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0129238_60	UniRef90	UniRef90_A0A843IDA1	RNA-directed DNA polymerase	NA
UHGV-0129238_60	eggNOG-mapper	1121100.JCM6294_1117	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0129238_60	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0129238_60	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0129238_60	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0129238_60	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0129238_62	eggNOG-mapper	877424.ATWC01000030_gene2426	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0129238_62	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-0129238_62	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0129238_62	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0129238_62	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0129238_64	eggNOG-mapper	1235797.C816_02847	NA	NA
UHGV-0129238_64	Structural annotation	PF18358, NF037951	NA	NA
UHGV-0129238_66	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0129238_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0129238_66	UniRef90	UniRef90_A0A6B9TBY6	Tyrosine-type recombinase/integrase	NA
UHGV-0129238_66	eggNOG-mapper	356829.BITS_1575	Phage integrase family	NA
UHGV-0129238_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129238_66	COG	COG4974	Site-specific recombinase XerD	NA