UHGV-0129359

Genome information

Genome length 27,813 bps

CDS count 52

Completeness 65.33% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129359
vOTU ID	vOTU-021628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331191
BioSample	SAMN00792111
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.56
Jumbo phage	No

Genome content
Genome length	27,813 bps
GC content	50.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.62%
Average CDS length	484.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129359_1	KOfam	K14059	int; integrase	NA
UHGV-0129359_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0129359_1	UniRef90	UniRef90_U2QJL8	Site-specific recombinase, phage integrase family	NA
UHGV-0129359_1	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0129359_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129359_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129359_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0129359_2	PHROG	phrog_33872	NA	unknown function
UHGV-0129359_3	eggNOG-mapper	1298920.KI911353_gene413	NA	NA
UHGV-0129359_4	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0129359_4	PHROG	phrog_10292	NA	unknown function
UHGV-0129359_4	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0129359_4	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0129359_4	Pfam	PF05154	TM2 domain	TM2
UHGV-0129359_4	COG	COG2314	NA	NA
UHGV-0129359_4	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0129359_5	PHROG	phrog_1914	NA	unknown function
UHGV-0129359_5	UniRef90	UniRef90_G9YPL5	Peptidase_M78 domain-containing protein	NA
UHGV-0129359_5	eggNOG-mapper	936572.HMPREF1148_0685	NA	NA
UHGV-0129359_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0129359_5	COG	COG1592	Rubrerythrin	NA
UHGV-0129359_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0129359_6	UniRef90	UniRef90_UPI00115ECC35	helix-turn-helix domain-containing protein	NA
UHGV-0129359_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129359_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129359_7	UniRef90	UniRef90_A0A412EXN2	XRE family transcriptional regulator	NA
UHGV-0129359_7	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0129359_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0129359_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129359_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0129359_9	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0129359_11	PHROG	phrog_25245	NA	unknown function
UHGV-0129359_11	UniRef90	UniRef90_A0A1C5W8M4	Cell wall-binding protein yocH	NA
UHGV-0129359_11	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0129359_11	Pfam	PF06725	3D domain	3D
UHGV-0129359_11	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0129359_11	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0129359_13	PHROG	phrog_674	NA	unknown function
UHGV-0129359_13	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-0129359_13	eggNOG-mapper	641112.ACOK01000103_gene524	NA	NA
UHGV-0129359_13	Pfam	PF07083	NA	DUF1351
UHGV-0129359_13	Structural annotation	PF07083	NA	NA
UHGV-0129359_14	PHROG	phrog_3657	NA	unknown function
UHGV-0129359_14	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0129359_14	eggNOG-mapper	1567011.A0A0A7RUE9_9VIRU	NA	NA
UHGV-0129359_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0129359_15	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-0129359_15	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0129359_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0129359_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0129359_15	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0129359_16	PHROG	phrog_15768	NA	unknown function
UHGV-0129359_16	UniRef90	UniRef90_A0A4D7AS84	NA	NA
UHGV-0129359_16	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0129359_16	AcrCatalog	cluster_38323	NA	NA
UHGV-0129359_16	Pfam	PF19808	NA	DUF6291
UHGV-0129359_16	Structural annotation	PF19808	NA	NA
UHGV-0129359_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129359_17	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0129359_17	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0129359_17	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0129359_18	UniRef90	UniRef90_A0A4D7ATA9	Helix-turn-helix domain-containing protein	NA
UHGV-0129359_18	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0129359_18	Structural annotation	PF04936, NF033558	NA	NA
UHGV-0129359_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0129359_19	UniRef90	UniRef90_A0A4D7B2Q5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0129359_19	eggNOG-mapper	411467.BACCAP_03937	COG COG0175 3-phosphoadenosine 5-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes	NA
UHGV-0129359_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0129359_19	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0129359_20	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0129359_20	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0129359_20	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0129359_20	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0129359_20	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0129359_21	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0129359_21	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0129359_21	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0129359_21	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0129359_21	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-0129359_23	PHROG	phrog_10714	NA	unknown function
UHGV-0129359_23	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0129359_23	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0129359_25	PHROG	phrog_25732	NA	unknown function
UHGV-0129359_25	Structural annotation	NF011227	NA	NA
UHGV-0129359_27	PHROG	phrog_37865	NA	unknown function
UHGV-0129359_29	PHROG	phrog_38832	NA	unknown function
UHGV-0129359_29	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0129359_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0129359_30	UniRef90	UniRef90_A0A2X2BKI2	Restriction alleviation protein, Lar family	NA
UHGV-0129359_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0129359_30	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0129359_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0129359_30	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0129359_34	PHROG	phrog_8684	NA	unknown function
UHGV-0129359_34	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-0129359_34	eggNOG-mapper	1300150.EMQU_2285	YopX protein	NA
UHGV-0129359_34	Pfam	PF09643	YopX protein	YopX
UHGV-0129359_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0129359_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0129359_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129359_36	UniRef90	UniRef90_A0A4D7AHN1	Helix-turn-helix domain-containing protein	NA
UHGV-0129359_36	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0129359_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0129359_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129359_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0129359_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0129359_37	UniRef90	UniRef90_A0A1V0QCE9	Bro-N domain-containing protein	NA
UHGV-0129359_37	eggNOG-mapper	658086.HMPREF0994_06321	Phage antirepressor protein KilAC domain	NA
UHGV-0129359_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129359_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0129359_37	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0129359_38	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0129359_38	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0129359_38	Structural annotation	PF13542	NA	NA
UHGV-0129359_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129359_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0129359_39	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0129359_39	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0129359_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0129359_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0129359_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129359_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129359_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0129359_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0129359_40	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0129359_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0129359_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129359_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0129359_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0129359_42	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0129359_42	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0129359_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0129359_42	COG	COG2369	NA	NA
UHGV-0129359_42	Structural annotation	PF06152	NA	NA
UHGV-0129359_44	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0129359_44	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0129359_44	AcrCatalog	cluster_74817	NA	NA
UHGV-0129359_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0129359_45	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0129359_45	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0129359_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0129359_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0129359_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0129359_45	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0129359_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129359_46	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0129359_47	PHROG	phrog_3366	NA	unknown function
UHGV-0129359_47	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0129359_47	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0129359_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129359_48	UniRef90	UniRef90_UPI00189F11C5	minor capsid protein	NA
UHGV-0129359_48	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0129359_48	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0129359_48	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0129359_49	PHROG	phrog_3266	tail completion	connector
UHGV-0129359_49	eggNOG-mapper	1226322.HMPREF1545_00055	NA	NA
UHGV-0129359_49	Structural annotation	PF12691	NA	NA
UHGV-0129359_50	PHROG	phrog_3099	NA	unknown function
UHGV-0129359_50	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0129359_50	Structural annotation	TIGR02126	NA	NA
UHGV-0129359_51	PHROG	phrog_11299	NA	unknown function
UHGV-0129359_51	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-0129359_51	Structural annotation	PF10666	NA	NA
UHGV-0129359_52	PHROG	phrog_706	NA	unknown function
UHGV-0129359_52	UniRef90	UniRef90_UPI0018A0FACA	Gp15 family bacteriophage protein	NA
UHGV-0129359_52	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0129359_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129359_52	Structural annotation	PF06854	NA	NA