UHGV-0129381

Genome information

Genome length 36,693 bps

CDS count 63

Completeness 96.24% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129381
vOTU ID	vOTU-060237
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_328187
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.94
Jumbo phage	No

Genome content
Genome length	36,693 bps
GC content	46.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.73%
Average CDS length	532.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129381_2	eggNOG-mapper	97139.C824_03109	NA	NA
UHGV-0129381_3	PHROG	phrog_13890	NA	unknown function
UHGV-0129381_3	UniRef90	UniRef90_A0A6N7UU43	NA	NA
UHGV-0129381_3	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0129381_3	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0129381_6	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0129381_7	PHROG	phrog_1129	holin	lysis
UHGV-0129381_7	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0129381_7	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0129381_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0129381_7	Structural annotation	PF06946	NA	NA
UHGV-0129381_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0129381_8	PHROG	phrog_435	endolysin	lysis
UHGV-0129381_8	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129381_8	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129381_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0129381_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129381_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0129381_9	COG	COG5492	NA	NA
UHGV-0129381_9	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-0129381_10	PHROG	phrog_21718	NA	unknown function
UHGV-0129381_10	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0129381_11	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0129381_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0129381_14	eggNOG-mapper	479437.Elen_0746	sequence-specific DNA binding	NA
UHGV-0129381_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129381_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0129381_14	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0129381_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129381_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0129381_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129381_16	UniRef90	UniRef90_A0A8J8SBE0	Helix-turn-helix transcriptional regulator	NA
UHGV-0129381_16	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0129381_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129381_16	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129381_16	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0129381_17	UniRef90	UniRef90_A0A373V5W6	XRE family transcriptional regulator	NA
UHGV-0129381_17	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0129381_17	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0129381_18	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0129381_18	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0129381_18	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0129381_18	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0129381_22	PHROG	phrog_14970	NA	unknown function
UHGV-0129381_22	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0129381_22	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0129381_22	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0129381_23	PHROG	phrog_7566	NA	unknown function
UHGV-0129381_23	UniRef90	UniRef90_UPI001C1E3E38	phosphoenolpyruvate carboxykinase	NA
UHGV-0129381_23	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0129381_24	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0129381_24	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0129381_24	Pfam	PF05772	NinB protein	NinB
UHGV-0129381_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129381_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129381_25	UniRef90	UniRef90_A0A6N7XL53	Single-stranded DNA-binding protein	NA
UHGV-0129381_25	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0129381_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129381_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129381_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129381_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129381_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0129381_26	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129381_26	UniRef90	UniRef90_I8RAX4	Phage replication initiation protein	NA
UHGV-0129381_26	eggNOG-mapper	1136177.KCA1_1070	DnaD domain protein	NA
UHGV-0129381_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129381_26	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0129381_28	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0129381_28	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0129381_28	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0129381_28	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0129381_28	Structural annotation	PF05565	NA	NA
UHGV-0129381_29	PHROG	phrog_474	phosphofructokinase	other
UHGV-0129381_29	UniRef90	UniRef90_UPI001D174B3C	NA	NA
UHGV-0129381_29	eggNOG-mapper	1111121.HMPREF1247_0807	NA	NA
UHGV-0129381_29	Pfam	PF19905	NA	DUF6378
UHGV-0129381_29	Structural annotation	PF19905	NA	NA
UHGV-0129381_30	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0129381_30	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0129381_30	UniRef90	UniRef90_UPI0012923FF4	helix-turn-helix domain-containing protein	NA
UHGV-0129381_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129381_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129381_30	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0129381_32	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129381_32	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0129381_32	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0129381_32	Pfam	PF06356	NA	DUF1064
UHGV-0129381_32	Structural annotation	PF06356	NA	NA
UHGV-0129381_33	PHROG	phrog_25754	NA	unknown function
UHGV-0129381_33	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0129381_33	Structural annotation	PF18195, MF_01077, NF000936, COG4568	NA	NA
UHGV-0129381_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0129381_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0129381_36	UniRef90	UniRef90_UPI00098C12D0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0129381_36	eggNOG-mapper	411490.ANACAC_00755	BRO family, N-terminal domain	NA
UHGV-0129381_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129381_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0129381_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0129381_36	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0129381_38	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0129381_38	eggNOG-mapper	1345695.CLSA_c30110	NA	NA
UHGV-0129381_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129381_41	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0129381_41	COG	COG0863	DNA modification methylase	NA
UHGV-0129381_41	Structural annotation	PF04545, PF01920, MF_00674, TIGR01637, COG2739	NA	NA
UHGV-0129381_42	eggNOG-mapper	471855.Shel_21700	NA	NA
UHGV-0129381_43	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0129381_43	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0129381_43	UniRef90	UniRef90_UPI00066D34BE	NA	NA
UHGV-0129381_43	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-0129381_43	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0129381_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0129381_43	Pfam	PF14386	NA	DUF4417
UHGV-0129381_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0129381_43	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0129381_44	PHROG	phrog_7153	zinc-finger protease	other
UHGV-0129381_44	Structural annotation	PF15887, COG4307	NA	NA
UHGV-0129381_46	PHROG	phrog_2412	NA	unknown function
UHGV-0129381_46	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0129381_46	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0129381_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129381_47	PHROG	phrog_10250	NA	unknown function
UHGV-0129381_47	UniRef90	UniRef90_UPI00088B4057	PBSX family phage terminase large subunit	NA
UHGV-0129381_47	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0129381_47	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0129381_47	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0129381_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129381_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129381_47	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129381_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129381_48	UniRef90	UniRef90_A0A352CU27	Phage portal protein	NA
UHGV-0129381_48	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0129381_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129381_48	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0129381_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0129381_49	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0129381_49	UniRef90	UniRef90_A0A316PZM8	Phage_Mu_F domain-containing protein	NA
UHGV-0129381_49	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0129381_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129381_49	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0129381_49	COG	COG2369	NA	NA
UHGV-0129381_50	PHROG	phrog_3675	NA	unknown function
UHGV-0129381_50	UniRef90	UniRef90_A0A173ZDX5	YjcQ protein	NA
UHGV-0129381_50	eggNOG-mapper	1235796.C815_00922	YjcQ protein	NA
UHGV-0129381_50	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0129381_50	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0129381_51	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0129381_51	UniRef90	UniRef90_UPI0019607A58	NA	NA
UHGV-0129381_51	eggNOG-mapper	553184.ATORI0001_1003	NA	NA
UHGV-0129381_51	Pfam	PF14265	NA	DUF4355
UHGV-0129381_51	Structural annotation	PF14265	NA	NA
UHGV-0129381_52	PHROG	phrog_840	major head protein	head and packaging
UHGV-0129381_52	UniRef90	UniRef90_A0A352CVQ3	Phage capsid protein	NA
UHGV-0129381_52	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0129381_52	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0129381_53	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0129381_53	UniRef90	UniRef90_A0A7Z8M3X6	Rho termination protein	NA
UHGV-0129381_53	eggNOG-mapper	1145276.T479_19965	NA	NA
UHGV-0129381_54	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0129381_54	UniRef90	UniRef90_A0A391NY33	Phage head-tail adapter protein	NA
UHGV-0129381_54	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0129381_54	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0129381_54	Structural annotation	PF05135	NA	NA
UHGV-0129381_55	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0129381_55	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0129381_55	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0129381_56	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0129381_56	UniRef90	UniRef90_UPI000E4088C2	HK97 gp10 family phage protein	NA
UHGV-0129381_56	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0129381_56	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0129381_56	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0129381_56	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0129381_57	PHROG	phrog_176	tail terminator	connector
UHGV-0129381_57	UniRef90	UniRef90_A0A3E3JYL5	NA	NA
UHGV-0129381_57	eggNOG-mapper	1235798.C817_03472	NA	NA
UHGV-0129381_57	Structural annotation	PF11367	NA	NA
UHGV-0129381_58	PHROG	phrog_238	major tail protein	tail
UHGV-0129381_58	UniRef90	UniRef90_A0A1Y4VJP7	Phage major tail protein, TP901-1 family	NA
UHGV-0129381_58	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0129381_58	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0129381_58	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0129381_58	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129381_59	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0129381_59	UniRef90	UniRef90_A0A1C5RIQ9	NA	NA
UHGV-0129381_59	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0129381_59	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0129381_59	Structural annotation	PF12363	NA	NA
UHGV-0129381_60	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0129381_61	PHROG	phrog_1204	tail protein	tail
UHGV-0129381_61	UniRef90	UniRef90_A0A7Y8VRG3	Tape measure protein	NA
UHGV-0129381_61	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0129381_61	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0129381_61	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0129381_61	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0129381_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129381_62	PHROG	phrog_5163	minor tail protein	tail
UHGV-0129381_62	UniRef90	UniRef90_A0A1C5RIA0	Phage-related protein	NA
UHGV-0129381_62	eggNOG-mapper	1158610.UC3_03184	Phage tail protein	NA
UHGV-0129381_62	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0129381_62	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0129381_62	COG	COG4722	Phage-related protein YomH	NA
UHGV-0129381_62	Structural annotation	PF05709, PF11614, TIGR01633, COG4722	NA	NA
UHGV-0129381_63	PHROG	phrog_9478	minor tail protein	tail
UHGV-0129381_63	UniRef90	UniRef90_UPI0008DA1694	phage tail protein	NA
UHGV-0129381_63	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0129381_63	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0129381_63	NCBIFam	TIGR01665.1	phage tail spike protein	NA