UHGV-0129391

Genome information

Genome length 25,734 bps

CDS count 44

Completeness 62.40% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129391
vOTU ID	vOTU-022923
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311182
BioSample	SAMEA37108168
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.3
Jumbo phage	No

Genome content
Genome length	25,734 bps
GC content	45.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.26%
Average CDS length	530.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129391_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0129391_1	UniRef90	UniRef90_A0A174PKR4	Phage-related protein	NA
UHGV-0129391_1	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0129391_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0129391_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0129391_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0129391_2	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0129391_2	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-0129391_2	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0129391_3	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0129391_3	UniRef90	UniRef90_A0A174PQ19	NA	NA
UHGV-0129391_3	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0129391_3	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0129391_3	Structural annotation	PF12363	NA	NA
UHGV-0129391_4	PHROG	phrog_238	major tail protein	tail
UHGV-0129391_4	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-0129391_4	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0129391_4	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0129391_4	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0129391_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129391_5	PHROG	phrog_176	tail terminator	connector
UHGV-0129391_5	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0129391_5	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0129391_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0129391_6	UniRef90	UniRef90_A0A174PPX0	Phage protein, HK97 gp10 family	NA
UHGV-0129391_6	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0129391_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0129391_6	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0129391_6	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0129391_7	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0129391_7	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0129391_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0129391_8	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0129391_8	UniRef90	UniRef90_A0A174PRY0	Phage gp6-like head-tail connector protein	NA
UHGV-0129391_8	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0129391_8	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0129391_8	Structural annotation	PF05135	NA	NA
UHGV-0129391_9	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0129391_9	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-0129391_9	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-0129391_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0129391_10	UniRef90	UniRef90_A0A174PKI4	S-l_SbsC_C domain-containing protein	NA
UHGV-0129391_10	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0129391_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0129391_10	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129391_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0129391_11	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-0129391_11	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0129391_11	Pfam	PF14265	NA	DUF4355
UHGV-0129391_11	Structural annotation	PF14265	NA	NA
UHGV-0129391_12	KOfam	K07584	NA	NA
UHGV-0129391_12	PHROG	phrog_4478	peptidase	other
UHGV-0129391_12	UniRef90	UniRef90_A0A417WXX2	Ribosomal-processing cysteine protease Prp	NA
UHGV-0129391_12	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0129391_12	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0129391_12	COG	COG2868	NA	NA
UHGV-0129391_12	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0129391_13	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0129391_13	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0129391_13	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0129391_14	PHROG	phrog_1048	NA	unknown function
UHGV-0129391_14	UniRef90	UniRef90_A0A417WXH0	NA	NA
UHGV-0129391_14	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0129391_14	Pfam	PF11195	NA	DUF2829
UHGV-0129391_14	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0129391_14	Structural annotation	PF11195	NA	NA
UHGV-0129391_15	PHROG	phrog_918	NA	unknown function
UHGV-0129391_15	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0129391_15	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0129391_15	Pfam	PF19791	NA	DUF6275
UHGV-0129391_15	Structural annotation	PF19791	NA	NA
UHGV-0129391_16	PHROG	phrog_3675	NA	unknown function
UHGV-0129391_16	UniRef90	UniRef90_A0A173ZDX5	YjcQ protein	NA
UHGV-0129391_16	eggNOG-mapper	1235796.C815_00922	YjcQ protein	NA
UHGV-0129391_16	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0129391_16	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0129391_17	PHROG	phrog_3675	NA	unknown function
UHGV-0129391_17	UniRef90	UniRef90_A0A174SAX8	YjcQ protein	NA
UHGV-0129391_17	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0129391_17	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0129391_17	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0129391_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0129391_19	UniRef90	UniRef90_A0A396P1E8	Phage_Mu_F domain-containing protein	NA
UHGV-0129391_19	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0129391_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129391_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0129391_19	COG	COG2369	NA	NA
UHGV-0129391_19	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0129391_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129391_20	UniRef90	UniRef90_A0A373P643	Phage portal protein	NA
UHGV-0129391_20	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0129391_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129391_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0129391_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0129391_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129391_21	PHROG	phrog_10250	NA	unknown function
UHGV-0129391_21	UniRef90	UniRef90_A0A373P5H0	PBSX family phage terminase large subunit	NA
UHGV-0129391_21	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0129391_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0129391_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129391_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129391_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129391_22	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0129391_22	UniRef90	UniRef90_A0A373P435	Terminase	NA
UHGV-0129391_22	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0129391_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0129391_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0129391_22	COG	COG5484	NA	NA
UHGV-0129391_22	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0129391_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129391_24	UniRef90	UniRef90_A0A174B4K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0129391_24	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0129391_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0129391_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0129391_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0129391_25	eggNOG-mapper	760568.Desku_0913	NA	NA
UHGV-0129391_27	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129391_27	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0129391_27	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0129391_27	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0129391_27	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0129391_27	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0129391_28	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129391_28	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-0129391_28	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0129391_28	Pfam	PF06356	NA	DUF1064
UHGV-0129391_28	Structural annotation	PF06356	NA	NA
UHGV-0129391_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129391_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129391_29	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-0129391_29	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0129391_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129391_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129391_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129391_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129391_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0129391_30	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0129391_30	UniRef90	UniRef90_A0A174S6P0	ERF superfamily	NA
UHGV-0129391_30	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0129391_30	Pfam	PF04404	ERF superfamily	ERF
UHGV-0129391_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129391_30	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0129391_31	PHROG	phrog_674	NA	unknown function
UHGV-0129391_31	UniRef90	UniRef90_A0A416ZL44	NA	NA
UHGV-0129391_31	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0129391_31	Pfam	PF07083	NA	DUF1351
UHGV-0129391_31	Structural annotation	PF07083	NA	NA
UHGV-0129391_34	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0129391_38	eggNOG-mapper	883156.HMPREF9282_01215	NA	NA
UHGV-0129391_38	Structural annotation	NF040556	NA	NA
UHGV-0129391_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0129391_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0129391_40	UniRef90	UniRef90_UPI001C00F634	phage antirepressor KilAC domain-containing protein	NA
UHGV-0129391_40	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0129391_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129391_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0129391_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0129391_40	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0129391_41	UniRef90	UniRef90_A0A4S2AF05	XRE family transcriptional regulator	NA
UHGV-0129391_41	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0129391_41	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0129391_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0129391_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129391_42	UniRef90	UniRef90_UPI001C127CAD	helix-turn-helix domain-containing protein	NA
UHGV-0129391_42	eggNOG-mapper	1163671.JAGI01000002_gene3058	Helix-turn-helix domain protein	NA
UHGV-0129391_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129391_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129391_43	PHROG	phrog_87	metallo-protease	other
UHGV-0129391_43	UniRef90	UniRef90_A0A416P6H2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0129391_43	eggNOG-mapper	1256908.HMPREF0373_00642	Zn peptidase	NA
UHGV-0129391_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0129391_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0129391_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0129391_44	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0129391_44	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129391_44	UniRef90	UniRef90_A0A417WY54	HNH endonuclease	NA
UHGV-0129391_44	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0129391_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0129391_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129391_44	Structural annotation	PF01844, NF040563, COG1403	NA	NA