UHGV-0129414

Genome information

Genome length 37,285 bps

CDS count 63

Completeness 98.33% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129414
vOTU ID	vOTU-009817
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311055
BioSample	SAMEA37065418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.62
Jumbo phage	No

Genome content
Genome length	37,285 bps
GC content	29.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	88.42%
Average CDS length	525.00 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129414_3	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0129414_3	PHROG	phrog_1493	endolysin	lysis
UHGV-0129414_3	UniRef90	UniRef90_K1TXM5	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0129414_3	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0129414_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0129414_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0129414_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0129414_3	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0129414_4	PHROG	phrog_1129	holin	lysis
UHGV-0129414_4	UniRef90	UniRef90_A0A1Q6M1T2	Holin	NA
UHGV-0129414_4	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0129414_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0129414_4	Structural annotation	PF06946	NA	NA
UHGV-0129414_5	PHROG	phrog_937	hemolysin	other
UHGV-0129414_5	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0129414_6	PHROG	phrog_5717	tail protein	tail
UHGV-0129414_6	UniRef90	UniRef90_A0A099I3H7	Pilus assembly protein (Fragment)	NA
UHGV-0129414_6	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0129414_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0129414_6	Structural annotation	COG4675	NA	NA
UHGV-0129414_7	Structural annotation	PF03906	NA	NA
UHGV-0129414_8	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0129414_8	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0129414_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0129414_8	Structural annotation	COG4926	NA	NA
UHGV-0129414_9	PHROG	phrog_6616	tail protein	tail
UHGV-0129414_9	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0129414_9	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0129414_9	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0129414_10	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0129414_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0129414_11	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0129414_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0129414_11	Pfam	PF05017	TMP repeat	TMP
UHGV-0129414_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0129414_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129414_12	UniRef90	UniRef90_R7F982	Conserved domain protein	NA
UHGV-0129414_12	eggNOG-mapper	573061.Clocel_0220	Mu-like prophage protein Com	NA
UHGV-0129414_12	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0129414_13	UniRef90	UniRef90_UPI00040B248B	Gp15 family bacteriophage protein	NA
UHGV-0129414_13	eggNOG-mapper	394503.Ccel_3283	Bacteriophage Gp15 protein	NA
UHGV-0129414_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129414_13	Structural annotation	PF06854	NA	NA
UHGV-0129414_14	PHROG	phrog_8300	NA	unknown function
UHGV-0129414_14	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-0129414_14	Structural annotation	PF06896	NA	NA
UHGV-0129414_15	PHROG	phrog_820	major tail protein	tail
UHGV-0129414_15	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0129414_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129414_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0129414_16	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-0129414_16	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0129414_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0129414_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0129414_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129414_17	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0129414_18	PHROG	phrog_8710	NA	unknown function
UHGV-0129414_18	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0129414_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0129414_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129414_19	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0129414_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0129414_21	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-0129414_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0129414_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129414_23	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0129414_23	UniRef90	UniRef90_A0A1Q6LGX4	PASTA domain-containing protein (Fragment)	NA
UHGV-0129414_23	eggNOG-mapper	1410674.JNKU01000005_gene1524	Host cell surface-exposed lipoprotein	NA
UHGV-0129414_23	Pfam	PF03793	PASTA domain	PASTA
UHGV-0129414_23	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0129414_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0129414_23	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0129414_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0129414_25	UniRef90	UniRef90_UPI001D086335	minor capsid protein	NA
UHGV-0129414_25	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-0129414_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0129414_25	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0129414_25	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0129414_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0129414_26	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-0129414_26	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-0129414_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0129414_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129414_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0129414_28	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-0129414_28	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0129414_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129414_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129414_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0129414_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0129414_29	UniRef90	UniRef90_UPI0006A4EA72	terminase small subunit	NA
UHGV-0129414_29	eggNOG-mapper	536232.CLM_2664	Terminase small subunit	NA
UHGV-0129414_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0129414_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0129414_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0129414_33	eggNOG-mapper	1158614.I592_01795	NA	NA
UHGV-0129414_34	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0129414_40	PHROG	phrog_8684	NA	unknown function
UHGV-0129414_40	UniRef90	UniRef90_R6N530	NA	NA
UHGV-0129414_40	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0129414_40	Pfam	PF09643	YopX protein	YopX
UHGV-0129414_40	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0129414_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0129414_43	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129414_43	eggNOG-mapper	32057.KB217481_gene8515	NA	NA
UHGV-0129414_43	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0129414_44	Structural annotation	PF15188	NA	NA
UHGV-0129414_45	PHROG	phrog_10201	NA	unknown function
UHGV-0129414_46	PHROG	phrog_9804	NA	unknown function
UHGV-0129414_46	UniRef90	UniRef90_A0A1I2QMA2	Loader and inhibitor of phage G40P	NA
UHGV-0129414_46	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0129414_46	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0129414_46	Structural annotation	PF11417	NA	NA
UHGV-0129414_47	PHROG	phrog_16304	NA	unknown function
UHGV-0129414_47	UniRef90	UniRef90_UPI001D0811D8	NA	NA
UHGV-0129414_47	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0129414_47	Pfam	PF19808	NA	DUF6291
UHGV-0129414_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129414_47	Structural annotation	PF19808	NA	NA
UHGV-0129414_48	PHROG	phrog_7566	NA	unknown function
UHGV-0129414_48	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0129414_49	PHROG	phrog_1389	NA	unknown function
UHGV-0129414_49	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0129414_49	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0129414_50	PHROG	phrog_18107	NA	unknown function
UHGV-0129414_50	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0129414_50	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0129414_50	Structural annotation	PF05037	NA	NA
UHGV-0129414_51	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0129414_51	UniRef90	UniRef90_UPI00058FD242	AAA family ATPase	NA
UHGV-0129414_51	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0129414_51	Pfam	PF13479	AAA domain	AAA_24
UHGV-0129414_51	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0129414_52	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0129414_52	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0129414_52	eggNOG-mapper	1449050.JNLE01000005_gene3949	Siphovirus Gp157	NA
UHGV-0129414_52	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0129414_52	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0129414_54	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0129414_54	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0129414_54	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0129414_54	eggNOG-mapper	574376.BAMA_10335	SpoVT / AbrB like domain	NA
UHGV-0129414_54	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0129414_54	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0129414_54	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0129414_54	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0129414_58	Structural annotation	PF21531, NF033787	NA	NA
UHGV-0129414_59	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0129414_59	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0129414_59	UniRef90	UniRef90_A0A1H8KVS3	Anti-repressor protein	NA
UHGV-0129414_59	eggNOG-mapper	663952.SDD27957_09340	AntA/AntB antirepressor	NA
UHGV-0129414_59	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0129414_59	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0129414_59	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0129414_59	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0129414_60	UniRef90	UniRef90_R5ZN14	HTH_8 domain-containing protein	NA
UHGV-0129414_60	eggNOG-mapper	431943.CKL_2015	NA	NA
UHGV-0129414_60	Structural annotation	PF05339, NF007271, COG3655	NA	NA
UHGV-0129414_61	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0129414_61	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0129414_61	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0129414_61	eggNOG-mapper	1403313.AXBR01000018_gene3552	Peptidase S24-like	NA
UHGV-0129414_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129414_61	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0129414_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129414_61	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0129414_62	KOfam	K14059	int; integrase	NA
UHGV-0129414_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0129414_62	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0129414_62	eggNOG-mapper	935948.KE386495_gene1213	Phage integrase family	NA
UHGV-0129414_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129414_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129414_62	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0129414_63	KOfam	K04772	degQ, hhoA; serine protease DegQ [EC:3.4.21.-]	NA
UHGV-0129414_63	PHROG	phrog_11383	NA	unknown function
UHGV-0129414_63	UniRef90	UniRef90_A0A1Q6M6P7	PDZ domain-containing protein	NA
UHGV-0129414_63	eggNOG-mapper	203119.Cthe_2513	Trypsin	NA
UHGV-0129414_63	PADLOC	retron_XI	single gene	Retron
UHGV-0129414_63	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0129414_63	Pfam	PF13180	PDZ domain	PDZ_2
UHGV-0129414_63	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA