UHGV-0129488

Genome information

Genome length 30,930 bps

CDS count 49

Completeness 71.47% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129488
vOTU ID	vOTU-042371
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326960
BioSample	SAMN00715138
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.45
Jumbo phage	No

Genome content
Genome length	30,930 bps
GC content	41.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.14%
Average CDS length	584.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129488_1	UniRef90	UniRef90_A0A7X8VAU8	Phage tail assembly protein	NA
UHGV-0129488_1	eggNOG-mapper	411902.CLOBOL_06816	NA	NA
UHGV-0129488_2	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0129488_2	PHROG	phrog_2649	endolysin	lysis
UHGV-0129488_2	UniRef90	UniRef90_R0BKC0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0129488_2	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0129488_2	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0129488_2	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0129488_2	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0129488_3	UniRef90	UniRef90_A0A352P5F4	XkdX family protein	NA
UHGV-0129488_3	eggNOG-mapper	1304866.K413DRAFT_3056	NA	NA
UHGV-0129488_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0129488_4	PHROG	phrog_12931	NA	unknown function
UHGV-0129488_5	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0129488_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0129488_6	PHROG	phrog_17196	kinase	other
UHGV-0129488_6	UniRef90	UniRef90_A0A2M8Z316	Collagen triple helix repeat protein	NA
UHGV-0129488_6	eggNOG-mapper	1298920.KI911353_gene2674	NA	NA
UHGV-0129488_6	Structural annotation	PF13619, COG3536	NA	NA
UHGV-0129488_8	PHROG	phrog_18190	NA	unknown function
UHGV-0129488_8	UniRef90	UniRef90_UPI001D15C06A	tail fiber domain-containing protein	NA
UHGV-0129488_8	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-0129488_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0129488_8	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0129488_9	PHROG	phrog_1194	NA	unknown function
UHGV-0129488_9	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0129488_9	Pfam	PF20458	NA	DUF6711
UHGV-0129488_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0129488_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0129488_10	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0129488_10	eggNOG-mapper	1298920.KI911353_gene2068	domain protein	NA
UHGV-0129488_10	COG	COG1511	NA	NA
UHGV-0129488_11	PHROG	phrog_706	NA	unknown function
UHGV-0129488_11	UniRef90	UniRef90_UPI001D1485B4	bacteriophage Gp15 family protein	NA
UHGV-0129488_11	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0129488_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129488_11	Structural annotation	PF06854	NA	NA
UHGV-0129488_12	PHROG	phrog_11299	NA	unknown function
UHGV-0129488_12	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0129488_12	Structural annotation	PF10666	NA	NA
UHGV-0129488_13	PHROG	phrog_3099	NA	unknown function
UHGV-0129488_13	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0129488_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129488_14	PHROG	phrog_3266	tail completion	connector
UHGV-0129488_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0129488_14	Structural annotation	PF12691	NA	NA
UHGV-0129488_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129488_15	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0129488_15	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0129488_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0129488_15	Structural annotation	PF11114	NA	NA
UHGV-0129488_16	PHROG	phrog_3366	NA	unknown function
UHGV-0129488_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0129488_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0129488_18	PHROG	phrog_8680	NA	unknown function
UHGV-0129488_18	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0129488_18	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0129488_18	Pfam	PF14386	NA	DUF4417
UHGV-0129488_18	Structural annotation	PF14386	NA	NA
UHGV-0129488_19	PHROG	phrog_1129	holin	lysis
UHGV-0129488_19	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0129488_19	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0129488_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0129488_19	Structural annotation	PF06946	NA	NA
UHGV-0129488_20	PHROG	phrog_419	NA	unknown function
UHGV-0129488_20	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0129488_20	Structural annotation	PF14083	NA	NA
UHGV-0129488_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129488_21	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0129488_22	PHROG	phrog_544	major head protein	head and packaging
UHGV-0129488_22	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0129488_22	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0129488_22	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0129488_22	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129488_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0129488_23	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0129488_23	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0129488_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0129488_23	Structural annotation	PF06810	NA	NA
UHGV-0129488_25	UniRef90	UniRef90_N9YMZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0129488_25	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129488_25	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0129488_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129488_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0129488_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129488_26	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-0129488_26	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0129488_26	Structural annotation	PF00847	NA	NA
UHGV-0129488_27	PHROG	phrog_28802	NA	unknown function
UHGV-0129488_27	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0129488_28	PHROG	phrog_20016	NA	unknown function
UHGV-0129488_28	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0129488_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0129488_30	PHROG	phrog_16490	NA	unknown function
UHGV-0129488_30	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0129488_31	PHROG	phrog_22984	NA	unknown function
UHGV-0129488_32	PHROG	phrog_21718	NA	unknown function
UHGV-0129488_32	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0129488_33	AcrCatalog	cluster_29073	NA	NA
UHGV-0129488_34	PHROG	phrog_25567	NA	unknown function
UHGV-0129488_34	eggNOG-mapper	742740.HMPREF9474_00058	NA	NA
UHGV-0129488_34	AcrCatalog	cluster_37554	NA	NA
UHGV-0129488_35	KOfam	K19118	csd2, cas7; CRISPR-associated protein Csd2	NA
UHGV-0129488_35	UniRef90	UniRef90_E7GTP3	Csd2 family CRISPR-associated protein	NA
UHGV-0129488_35	eggNOG-mapper	742740.HMPREF9474_04288	NA	NA
UHGV-0129488_35	PADLOC	cas_Csd2	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
UHGV-0129488_35	Pfam	PF05107	CRISPR-associated protein Cas7	Cas_Cas7
UHGV-0129488_35	NCBIFam	TIGR02589.1	type I-C CRISPR-associated protein Cas7/Csd2	NA
UHGV-0129488_35	COG	COG3649	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0129488_35	Structural annotation	PF05107, TIGR02589, COG3649	NA	NA
UHGV-0129488_36	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0129488_36	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0129488_36	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0129488_37	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0129488_37	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0129488_38	PHROG	phrog_3754	NA	unknown function
UHGV-0129488_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0129488_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0129488_39	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0129488_39	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0129488_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0129488_39	COG	COG2369	NA	NA
UHGV-0129488_39	Structural annotation	PF06152	NA	NA
UHGV-0129488_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0129488_40	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0129488_40	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0129488_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0129488_42	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129488_42	UniRef90	UniRef90_A0A3E2U4F6	AP2 domain-containing protein	NA
UHGV-0129488_42	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0129488_42	Pfam	PF00847	AP2 domain	AP2
UHGV-0129488_42	Structural annotation	PF00847	NA	NA
UHGV-0129488_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129488_43	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0129488_43	UniRef90	UniRef90_A0A3E2U4P7	PBSX family phage terminase large subunit	NA
UHGV-0129488_43	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0129488_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0129488_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0129488_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129488_43	Structural annotation	PF17288, PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0129488_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129488_44	UniRef90	UniRef90_A0A414AG65	HNHc domain-containing protein	NA
UHGV-0129488_44	eggNOG-mapper	1260356.D920_01718	HNH endonuclease	NA
UHGV-0129488_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0129488_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0129488_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0129488_44	Structural annotation	PF07463	NA	NA
UHGV-0129488_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129488_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0129488_45	UniRef90	UniRef90_A0A0U5PLY3	Phage terminase large subunit	NA
UHGV-0129488_45	eggNOG-mapper	1235800.C819_00493	Phage terminase large subunit	NA
UHGV-0129488_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0129488_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129488_45	Structural annotation	PF04466	NA	NA
UHGV-0129488_46	UniRef90	UniRef90_A0A3E2U5Z1	Helix-turn-helix domain-containing protein	NA
UHGV-0129488_46	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0129488_46	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0129488_46	Structural annotation	PF13542	NA	NA
UHGV-0129488_48	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0129488_48	AcrCatalog	cluster_11670	NA	NA
UHGV-0129488_49	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0129488_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0129488_49	UniRef90	UniRef90_UPI001D14C144	tyrosine-type recombinase/integrase	NA
UHGV-0129488_49	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0129488_49	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0129488_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129488_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0129488_49	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA