UHGV-0129541

Genome information

Genome length 28,515 bps

CDS count 45

Completeness 69.40% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129541
vOTU ID	vOTU-017037
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_335303
BioSample	SAMN00792100
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.42
Jumbo phage	No

Genome content
Genome length	28,515 bps
GC content	45.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.33%
Average CDS length	582.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129541_2	PHROG	phrog_25231	NA	unknown function
UHGV-0129541_2	eggNOG-mapper	411902.CLOBOL_05673	NA	NA
UHGV-0129541_2	Structural annotation	PF04936	NA	NA
UHGV-0129541_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0129541_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0129541_3	UniRef90	UniRef90_A0A0F0C3Y7	Tyrosine recombinase XerC	NA
UHGV-0129541_3	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0129541_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0129541_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129541_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0129541_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0129541_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129541_4	eggNOG-mapper	742733.HMPREF9469_01831	NA	NA
UHGV-0129541_4	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0129541_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0129541_5	PHROG	phrog_3502	NA	unknown function
UHGV-0129541_5	UniRef90	UniRef90_G5HGR1	LexA_DNA_bind domain-containing protein	NA
UHGV-0129541_5	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-0129541_5	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0129541_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129541_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0129541_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0129541_7	UniRef90	UniRef90_UPI001EE15496	terminase small subunit	NA
UHGV-0129541_7	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0129541_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0129541_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0129541_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0129541_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129541_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0129541_8	UniRef90	UniRef90_G5HGQ8	Phage terminase large subunit	NA
UHGV-0129541_8	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-0129541_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0129541_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0129541_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129541_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129541_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0129541_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0129541_9	UniRef90	UniRef90_G5HGQ7	SPP1 family phage portal protein	NA
UHGV-0129541_9	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0129541_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0129541_9	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0129541_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0129541_10	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0129541_10	UniRef90	UniRef90_G5HGQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0129541_10	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0129541_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0129541_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0129541_10	COG	COG2369	NA	NA
UHGV-0129541_10	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0129541_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0129541_11	UniRef90	UniRef90_A0A414AP34	NA	NA
UHGV-0129541_11	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0129541_11	Pfam	PF14265	NA	DUF4355
UHGV-0129541_11	Structural annotation	PF14265	NA	NA
UHGV-0129541_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0129541_12	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0129541_12	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0129541_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0129541_13	PHROG	phrog_2724	NA	unknown function
UHGV-0129541_13	UniRef90	UniRef90_UPI001EDCAE16	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0129541_13	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0129541_13	COG	COG0261	Ribosomal protein L21	NA
UHGV-0129541_13	Structural annotation	PF07498	NA	NA
UHGV-0129541_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0129541_14	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-0129541_14	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0129541_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0129541_14	Structural annotation	PF05135	NA	NA
UHGV-0129541_15	PHROG	phrog_2168	NA	unknown function
UHGV-0129541_15	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0129541_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0129541_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0129541_16	UniRef90	UniRef90_UPI001EE062D2	HK97 gp10 family phage protein	NA
UHGV-0129541_16	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0129541_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0129541_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0129541_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0129541_17	PHROG	phrog_78	tail terminator	connector
UHGV-0129541_17	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0129541_17	Structural annotation	PF05657	NA	NA
UHGV-0129541_18	PHROG	phrog_158	major tail protein	tail
UHGV-0129541_18	UniRef90	UniRef90_UPI001EDD992B	phage tail protein	NA
UHGV-0129541_18	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0129541_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0129541_19	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0129541_19	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-0129541_19	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0129541_19	Pfam	PF19591	NA	DUF6096
UHGV-0129541_19	Structural annotation	PF19591	NA	NA
UHGV-0129541_20	PHROG	phrog_2066	NA	unknown function
UHGV-0129541_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0129541_21	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0129541_21	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0129541_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0129541_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129541_22	PHROG	phrog_9418	NA	unknown function
UHGV-0129541_22	UniRef90	UniRef90_N9XK57	zinc_ribbon_2 domain-containing protein	NA
UHGV-0129541_22	eggNOG-mapper	1235798.C817_02111	NA	NA
UHGV-0129541_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0129541_23	PHROG	phrog_1194	NA	unknown function
UHGV-0129541_23	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0129541_23	Pfam	PF20458	NA	DUF6711
UHGV-0129541_23	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0129541_24	PHROG	phrog_18190	NA	unknown function
UHGV-0129541_24	UniRef90	UniRef90_G5HGN8	Peptidase S74 domain-containing protein	NA
UHGV-0129541_24	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0129541_24	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0129541_24	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0129541_26	PHROG	phrog_17196	kinase	other
UHGV-0129541_26	UniRef90	UniRef90_A0A2M8Z316	Collagen triple helix repeat protein	NA
UHGV-0129541_26	eggNOG-mapper	742733.HMPREF9469_01805	NA	NA
UHGV-0129541_27	PHROG	phrog_16164	NA	unknown function
UHGV-0129541_27	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0129541_27	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0129541_28	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0129541_28	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0129541_28	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0129541_30	UniRef90	UniRef90_A0A412ZBR4	H_lectin domain-containing protein	NA
UHGV-0129541_30	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0129541_32	UniRef90	UniRef90_UPI0008764DD7	HNH endonuclease	NA
UHGV-0129541_32	eggNOG-mapper	546268.NEISUBOT_03317	HNH endonuclease	NA
UHGV-0129541_32	COG	COG3183	Predicted restriction endonuclease, HNH family	NA
UHGV-0129541_33	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0129541_34	UniRef90	UniRef90_A0A3E2U4U3	XkdX family protein	NA
UHGV-0129541_34	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0129541_34	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0129541_35	PHROG	phrog_937	hemolysin	other
UHGV-0129541_35	UniRef90	UniRef90_R5GGW2	Phosphoglucosamine mutase	NA
UHGV-0129541_35	eggNOG-mapper	1298920.KI911353_gene2670	NA	NA
UHGV-0129541_36	PHROG	phrog_443	holin	lysis
UHGV-0129541_36	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0129541_36	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0129541_36	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0129541_36	Structural annotation	PF16945	NA	NA
UHGV-0129541_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0129541_37	PHROG	phrog_9611	endolysin	lysis
UHGV-0129541_37	UniRef90	UniRef90_A0A3E2WBP8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129541_37	eggNOG-mapper	742733.HMPREF9469_01796	Ami_2	NA
UHGV-0129541_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0129541_37	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0129541_37	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0129541_37	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0129541_38	PHROG	phrog_1281	NA	unknown function
UHGV-0129541_38	UniRef90	UniRef90_UPI001D08ECDD	NA	NA
UHGV-0129541_38	eggNOG-mapper	1203606.HMPREF1526_00348	NA	NA
UHGV-0129541_38	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0129541_38	COG	COG3600	NA	NA
UHGV-0129541_38	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0129541_39	PHROG	phrog_5763	NA	unknown function
UHGV-0129541_39	eggNOG-mapper	1211844.CBLM010000016_gene1501	NA	NA
UHGV-0129541_40	UniRef90	UniRef90_A0A6N7WRP2	NA	NA
UHGV-0129541_41	UniRef90	UniRef90_UPI001D07D3AB	helix-turn-helix domain-containing protein	NA
UHGV-0129541_41	eggNOG-mapper	679200.HMPREF9333_02253	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129541_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129541_41	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0129541_42	AcrCatalog	cluster_27905	NA	NA
UHGV-0129541_44	eggNOG-mapper	742733.HMPREF9469_01795	NA	NA
UHGV-0129541_45	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0129541_45	UniRef90	UniRef90_A0A3E2U545	XRE family transcriptional regulator	NA
UHGV-0129541_45	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0129541_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31