UHGV-0129567

Genome information

Genome length 37,416 bps

CDS count 50

Completeness 97.86% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129567
vOTU ID	vOTU-010397
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_310598
BioSample	SAMEA37118668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.02
Jumbo phage	No

Genome content
Genome length	37,416 bps
GC content	37.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.76%
Average CDS length	697.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129567_1	eggNOG-mapper	411469.EUBHAL_01069	NA	NA
UHGV-0129567_2	KOfam	K14059	int; integrase	NA
UHGV-0129567_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0129567_2	UniRef90	UniRef90_A0A173S3V2	Tyrosine recombinase XerD	NA
UHGV-0129567_2	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0129567_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129567_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129567_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0129567_3	UniRef90	UniRef90_A0A173RTG3	Bacterial Ig-like domain (Group 2)	NA
UHGV-0129567_3	eggNOG-mapper	1449050.JNLE01000003_gene3872	Bacterial Ig-like domain (group 2)	NA
UHGV-0129567_3	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0129567_3	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0129567_4	PHROG	phrog_87	metallo-protease	other
UHGV-0129567_4	UniRef90	UniRef90_A0A173RF40	Metallopeptidase immA	NA
UHGV-0129567_4	eggNOG-mapper	742740.HMPREF9474_03480	NA	NA
UHGV-0129567_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0129567_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0129567_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0129567_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0129567_5	UniRef90	UniRef90_A0A173REI3	Helix-turn-helix	NA
UHGV-0129567_5	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129567_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129567_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0129567_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0129567_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0129567_6	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0129567_6	UniRef90	UniRef90_A0A173RFH2	Helix-turn-helix	NA
UHGV-0129567_6	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129567_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129567_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129567_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0129567_9	Structural annotation	NF037954	NA	NA
UHGV-0129567_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129567_10	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0129567_10	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-0129567_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129567_10	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0129567_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0129567_13	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0129567_13	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0129567_13	Structural annotation	PF21578	NA	NA
UHGV-0129567_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0129567_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0129567_14	UniRef90	UniRef90_A0A415YC84	RNase H type-1 domain-containing protein	NA
UHGV-0129567_14	eggNOG-mapper	1122139.KB907863_gene1814	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0129567_14	Pfam	PF00075	RNase H	RNase_H
UHGV-0129567_14	COG	COG0328	Ribonuclease HI	NA
UHGV-0129567_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0129567_15	UniRef90	UniRef90_A0A415YC18	HNH endonuclease	NA
UHGV-0129567_15	eggNOG-mapper	1540257.JQMW01000009_gene3675	HNH nucleases	NA
UHGV-0129567_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129567_15	Structural annotation	COG5126	NA	NA
UHGV-0129567_16	UniRef90	UniRef90_UPI0015704B43	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0129567_16	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0129567_16	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0129567_17	PHROG	phrog_8470	NA	unknown function
UHGV-0129567_17	UniRef90	UniRef90_UPI00156DB36C	PcfJ domain-containing protein	NA
UHGV-0129567_17	eggNOG-mapper	397288.C806_03897	PcfJ-like protein	NA
UHGV-0129567_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0129567_17	Structural annotation	PF14284	NA	NA
UHGV-0129567_18	PHROG	phrog_15077	NA	unknown function
UHGV-0129567_18	UniRef90	UniRef90_A0A415YC35	NA	NA
UHGV-0129567_18	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0129567_18	Pfam	PF12961	NA	DUF3850
UHGV-0129567_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0129567_18	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-0129567_20	UniRef90	UniRef90_A0A415YC13	Transposase	NA
UHGV-0129567_20	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0129567_20	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0129567_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0129567_20	Structural annotation	PF01710, NF040595, COG3415	NA	NA
UHGV-0129567_22	PHROG	phrog_1672	NA	unknown function
UHGV-0129567_22	eggNOG-mapper	632245.CLP_1632	NA	NA
UHGV-0129567_23	PHROG	phrog_30258	NA	unknown function
UHGV-0129567_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129567_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0129567_25	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0129567_25	Structural annotation	PF02996	NA	NA
UHGV-0129567_26	PHROG	phrog_872	NA	unknown function
UHGV-0129567_26	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0129567_26	dbAPIS	APIS052	NA	NA
UHGV-0129567_27	PHROG	phrog_918	NA	unknown function
UHGV-0129567_27	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0129567_27	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0129567_27	Pfam	PF19791	NA	DUF6275
UHGV-0129567_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0129567_28	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0129567_28	eggNOG-mapper	397290.C810_00409	NA	NA
UHGV-0129567_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0129567_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0129567_29	UniRef90	UniRef90_UPI00156DD68E	terminase small subunit	NA
UHGV-0129567_29	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0129567_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0129567_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0129567_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0129567_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129567_30	PHROG	phrog_10250	NA	unknown function
UHGV-0129567_30	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0129567_30	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0129567_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129567_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129567_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0129567_31	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0129567_31	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0129567_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0129567_32	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0129567_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0129567_32	UniRef90	UniRef90_A0A417V7Z4	Minor capsid protein	NA
UHGV-0129567_32	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0129567_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0129567_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0129567_32	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0129567_32	Structural annotation	PF06152, PF01129, NF041404	NA	NA
UHGV-0129567_34	Structural annotation	PF20873	NA	NA
UHGV-0129567_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0129567_35	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0129567_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0129567_36	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0129567_36	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0129567_36	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129567_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129567_37	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0129567_38	PHROG	phrog_8710	NA	unknown function
UHGV-0129567_38	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0129567_38	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0129567_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129567_39	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0129567_40	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0129567_40	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0129567_40	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0129567_40	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0129567_40	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0129567_41	PHROG	phrog_820	major tail protein	tail
UHGV-0129567_41	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0129567_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129567_42	PHROG	phrog_8300	NA	unknown function
UHGV-0129567_42	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0129567_42	Structural annotation	PF06854	NA	NA
UHGV-0129567_43	PHROG	phrog_8355	NA	unknown function
UHGV-0129567_43	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0129567_43	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0129567_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0129567_44	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0129567_44	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0129567_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0129567_44	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129567_45	PHROG	phrog_1194	NA	unknown function
UHGV-0129567_45	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0129567_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0129567_46	PHROG	phrog_1401	NA	unknown function
UHGV-0129567_46	Structural annotation	PF07761	NA	NA
UHGV-0129567_47	PHROG	phrog_16267	NA	unknown function
UHGV-0129567_47	UniRef90	UniRef90_A0A417V835	Peptidase S74 domain-containing protein	NA
UHGV-0129567_47	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0129567_47	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0129567_47	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0129567_47	COG	COG4926	Phage-related protein	NA
UHGV-0129567_48	PHROG	phrog_2566	NA	unknown function
UHGV-0129567_48	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0129567_49	PHROG	phrog_199	holin	lysis
UHGV-0129567_49	UniRef90	UniRef90_A0A417V866	Holin	NA
UHGV-0129567_49	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0129567_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0129567_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0129567_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0129567_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0129567_50	PHROG	phrog_21357	endolysin	lysis
UHGV-0129567_50	UniRef90	UniRef90_A0A417V8P8	CHAP domain-containing protein	NA
UHGV-0129567_50	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0129567_50	Pfam	PF05257	CHAP domain	CHAP
UHGV-0129567_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0129567_50	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA