UHGV-0129603

Genome information

Genome length 40,861 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9676

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129603
vOTU ID	vOTU-045916
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331730
BioSample	SAMN00792023
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9676
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.61
Jumbo phage	No

Genome content
Genome length	40,861 bps
GC content	30.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.55%
Average CDS length	654.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129603_2	UniRef90	UniRef90_R6B329	HTH cro/C1-type domain-containing protein	NA
UHGV-0129603_2	eggNOG-mapper	203119.Cthe_1154	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129603_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129603_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129603_2	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0129603_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0129603_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0129603_3	UniRef90	UniRef90_A0A7V6PVH0	Tyrosine recombinase XerC	NA
UHGV-0129603_3	eggNOG-mapper	641112.ACOK01000082_gene3305	Belongs to the 'phage' integrase family	NA
UHGV-0129603_3	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0129603_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129603_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0129603_3	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0129603_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0129603_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129603_4	UniRef90	UniRef90_A0A2H0NCZ5	DNA-binding protein	NA
UHGV-0129603_4	eggNOG-mapper	694431.DESACE_08910	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0129603_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0129603_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129603_4	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0129603_6	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0129603_6	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0129603_6	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0129603_6	eggNOG-mapper	1460640.JCM19046_3644	SpoVT / AbrB like domain	NA
UHGV-0129603_6	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0129603_6	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0129603_6	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0129603_6	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0129603_6	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0129603_8	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0129603_8	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0129603_8	Pfam	PF06378	NA	DUF1071
UHGV-0129603_8	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0129603_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129603_9	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0129603_9	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0129603_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0129603_9	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0129603_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129603_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129603_10	UniRef90	UniRef90_R5PVH7	Single-stranded DNA-binding protein	NA
UHGV-0129603_10	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-0129603_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129603_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129603_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129603_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129603_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0129603_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0129603_11	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0129603_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0129603_12	PHROG	phrog_7566	NA	unknown function
UHGV-0129603_12	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0129603_14	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0129603_14	UniRef90	UniRef90_A0A377WGF2	Primosomal protein I	NA
UHGV-0129603_14	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0129603_15	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0129603_15	eggNOG-mapper	272563.CD630_31510	DnaD domain protein	NA
UHGV-0129603_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129603_16	KOfam	K06940	NA	NA
UHGV-0129603_16	PHROG	phrog_32498	NA	unknown function
UHGV-0129603_16	UniRef90	UniRef90_UPI001D01BADA	YkgJ family cysteine cluster protein	NA
UHGV-0129603_16	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0129603_16	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0129603_17	UniRef90	UniRef90_UPI0018A090A4	demethylase	NA
UHGV-0129603_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0129603_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129603_19	UniRef90	UniRef90_R7FJ42	NA	NA
UHGV-0129603_19	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0129603_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0129603_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0129603_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0129603_22	eggNOG-mapper	1280676.AUJO01000016_gene1106	NA	NA
UHGV-0129603_24	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0129603_25	PHROG	phrog_8684	NA	unknown function
UHGV-0129603_25	UniRef90	UniRef90_R6N530	NA	NA
UHGV-0129603_25	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0129603_25	Pfam	PF09643	YopX protein	YopX
UHGV-0129603_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0129603_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0129603_26	PHROG	phrog_23490	NA	unknown function
UHGV-0129603_27	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0129603_27	UniRef90	UniRef90_A0A5L8YWR8	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0129603_27	eggNOG-mapper	1458856.A0A059T5F9_9CAUD	methyltransferase activity	NA
UHGV-0129603_27	Structural annotation	PF05869, MF_01872, TIGR01712, COG2263	NA	NA
UHGV-0129603_37	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0129603_37	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-0129603_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0129603_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0129603_38	UniRef90	UniRef90_UPI00106A7A15	terminase small subunit	NA
UHGV-0129603_38	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0129603_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0129603_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0129603_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129603_39	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0129603_39	UniRef90	UniRef90_A0A318KRY5	Terminase family protein	NA
UHGV-0129603_39	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0129603_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0129603_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129603_39	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129603_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-0129603_41	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0129603_41	Structural annotation	PF12236, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0129603_42	Pfam	PF00096	Zinc finger, C2H2 type	zf-C2H2
UHGV-0129603_42	Structural annotation	PF17772	NA	NA
UHGV-0129603_44	PHROG	phrog_371	major head protein	head and packaging
UHGV-0129603_44	UniRef90	UniRef90_A0A329MWI7	Mu-like_gpT domain-containing protein	NA
UHGV-0129603_44	eggNOG-mapper	1197719.A464_492	Mu-like prophage major head subunit gpT	NA
UHGV-0129603_44	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0129603_44	COG	COG4397	Mu-like prophage major head subunit gpT	NA
UHGV-0129603_45	eggNOG-mapper	1033737.CAEV01000007_gene2578	Phage tail-collar fibre protein	NA
UHGV-0129603_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0129603_47	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-0129603_47	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0129603_47	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0129603_48	Structural annotation	PF20387	NA	NA
UHGV-0129603_49	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0129603_49	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0129603_52	KOfam	K05516	cbpA; curved DNA-binding protein	NA
UHGV-0129603_52	PHROG	phrog_9854	NA	unknown function
UHGV-0129603_52	eggNOG-mapper	696281.Desru_1103	Tfp pilus assembly protein FimV	NA
UHGV-0129603_52	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0129603_52	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0129603_52	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0129603_52	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0129603_52	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0129603_54	KOfam	K10461	KLHL24_35; kelch-like protein 24/35	NA
UHGV-0129603_55	UniRef90	UniRef90_A0A5M9I3H9	Branched-chain amino acid ABC transporter permease	NA
UHGV-0129603_55	eggNOG-mapper	665950.HMPREF1025_02515	NA	NA
UHGV-0129603_56	PHROG	phrog_13256	NA	unknown function
UHGV-0129603_57	PHROG	phrog_21357	endolysin	lysis
UHGV-0129603_57	UniRef90	UniRef90_A0A3D2KVT9	Peptidase C51 domain-containing protein	NA
UHGV-0129603_57	eggNOG-mapper	1378168.N510_03332	NLP P60 protein	NA
UHGV-0129603_57	Pfam	PF05257	CHAP domain	CHAP
UHGV-0129603_57	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0129603_57	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0129603_57	Structural annotation	PF01471, PF10030, TIGR02594, TIGR02869, COG3409, COG0791	NA	NA