UHGV-0129699

Genome information

Genome length 29,162 bps

CDS count 39

Completeness 64.74% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129699
vOTU ID	vOTU-027145
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_311103
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.7
Jumbo phage	No

Genome content
Genome length	29,162 bps
GC content	41.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.92%
Average CDS length	675.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129699_1	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0129699_1	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0129699_2	PHROG	phrog_21718	NA	unknown function
UHGV-0129699_2	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0129699_3	PHROG	phrog_22984	NA	unknown function
UHGV-0129699_4	PHROG	phrog_16490	NA	unknown function
UHGV-0129699_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0129699_5	PHROG	phrog_20016	NA	unknown function
UHGV-0129699_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0129699_5	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0129699_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0129699_6	PHROG	phrog_28802	NA	unknown function
UHGV-0129699_6	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0129699_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0129699_7	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0129699_7	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0129699_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0129699_8	PHROG	phrog_544	major head protein	head and packaging
UHGV-0129699_8	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0129699_8	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0129699_8	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0129699_8	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0129699_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129699_9	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0129699_10	PHROG	phrog_18218	NA	unknown function
UHGV-0129699_10	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0129699_10	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0129699_10	Structural annotation	PF06946	NA	NA
UHGV-0129699_11	PHROG	phrog_3366	NA	unknown function
UHGV-0129699_11	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0129699_11	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0129699_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129699_12	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0129699_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0129699_12	Structural annotation	PF11114	NA	NA
UHGV-0129699_13	PHROG	phrog_3266	tail completion	connector
UHGV-0129699_13	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0129699_13	Structural annotation	PF12691	NA	NA
UHGV-0129699_14	PHROG	phrog_3099	NA	unknown function
UHGV-0129699_14	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0129699_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129699_15	PHROG	phrog_11299	NA	unknown function
UHGV-0129699_15	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0129699_15	Structural annotation	PF10666	NA	NA
UHGV-0129699_16	PHROG	phrog_706	NA	unknown function
UHGV-0129699_16	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0129699_16	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0129699_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129699_16	Structural annotation	PF06854	NA	NA
UHGV-0129699_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0129699_17	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0129699_17	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0129699_17	COG	COG1511	NA	NA
UHGV-0129699_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129699_18	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0129699_19	PHROG	phrog_6616	tail protein	tail
UHGV-0129699_19	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0129699_19	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0129699_19	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0129699_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0129699_21	PHROG	phrog_291	endolysin	lysis
UHGV-0129699_21	UniRef90	UniRef90_A0A1C5RZF8	Autolytic lysozyme	NA
UHGV-0129699_21	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0129699_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0129699_21	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0129699_21	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0129699_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0129699_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0129699_22	UniRef90	UniRef90_A0A412ELC2	Recombinase family protein	NA
UHGV-0129699_22	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0129699_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0129699_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-0129699_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0129699_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0129699_22	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0129699_23	PHROG	phrog_4431	NA	unknown function
UHGV-0129699_23	UniRef90	UniRef90_A0A412ELU3	SHOCT domain-containing protein	NA
UHGV-0129699_23	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-0129699_23	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0129699_24	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0129699_24	PHROG	phrog_8810	NA	unknown function
UHGV-0129699_24	UniRef90	UniRef90_A0A395X907	Stage 0 sporulation protein A homolog	NA
UHGV-0129699_24	eggNOG-mapper	742740.HMPREF9474_03223	LytTr DNA-binding domain	NA
UHGV-0129699_24	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0129699_24	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0129699_24	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0129699_24	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0129699_25	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0129699_25	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0129699_25	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0129699_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129699_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129699_25	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0129699_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0129699_26	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0129699_26	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129699_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0129699_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129699_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129699_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0129699_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0129699_28	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0129699_28	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0129699_30	AcrCatalog	cluster_17974	NA	NA
UHGV-0129699_31	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0129699_33	Structural annotation	NF001645	NA	NA
UHGV-0129699_34	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0129699_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0129699_35	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-0129699_35	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0129699_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0129699_35	Structural annotation	PF04404, TIGR00607, COG1978	NA	NA
UHGV-0129699_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129699_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129699_36	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0129699_36	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0129699_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129699_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129699_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129699_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129699_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0129699_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0129699_37	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0129699_37	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0129699_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0129699_37	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0129699_38	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0129699_38	PHROG	phrog_11992	NA	unknown function
UHGV-0129699_38	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0129699_38	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0129699_38	PADLOC	drt-cluster192	DRT	DRT
UHGV-0129699_38	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0129699_38	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0129699_38	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0129699_39	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0129699_39	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0129699_39	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0129699_39	Pfam	PF06048	NA	DUF927
UHGV-0129699_39	COG	COG5519	NA	NA
UHGV-0129699_39	Structural annotation	PF06048, TIGR03420, COG5519	NA	NA