UHGV-0129731

Genome information

Genome length 38,021 bps

CDS count 55

Completeness 95.89% (high-quality)

geNomad score 0.9645

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129731
vOTU ID	vOTU-066975
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323348
BioSample	SAMN00792089
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9645
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.61
Jumbo phage	No

Genome content
Genome length	38,021 bps
GC content	32.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.40%
Average CDS length	633.49 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129731_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0129731_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0129731_1	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-0129731_1	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-0129731_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0129731_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0129731_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0129731_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0129731_3	PHROG	phrog_1914	NA	unknown function
UHGV-0129731_3	UniRef90	UniRef90_A0A3D4VT22	Peptidase_M78 domain-containing protein	NA
UHGV-0129731_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0129731_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0129731_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0129731_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0129731_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0129731_4	UniRef90	UniRef90_V9HSK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0129731_4	eggNOG-mapper	1151292.QEW_2478	Helix-turn-helix domain	NA
UHGV-0129731_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0129731_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0129731_4	Structural annotation	PF12844, MF_02017, NF041951, COG3655	NA	NA
UHGV-0129731_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129731_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129731_9	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-0129731_9	eggNOG-mapper	1235792.C808_05177	Single-strand binding protein family	NA
UHGV-0129731_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129731_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129731_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129731_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0129731_9	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0129731_10	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129731_10	UniRef90	UniRef90_UPI001CF931D4	DnaD domain protein	NA
UHGV-0129731_10	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-0129731_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129731_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0129731_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0129731_11	UniRef90	UniRef90_N1ZN47	Replicative DNA helicase	NA
UHGV-0129731_11	eggNOG-mapper	97138.C820_00625	Participates in initiation and elongation during chromosome replication	NA
UHGV-0129731_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0129731_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0129731_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0129731_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0129731_14	eggNOG-mapper	1095750.HMPREF9970_0178	NA	NA
UHGV-0129731_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129731_20	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0129731_20	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0129731_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0129731_20	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0129731_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0129731_21	PHROG	phrog_216	integrase	integration and excision
UHGV-0129731_21	UniRef90	UniRef90_A0A0L6ZC98	Tyrosine recombinase XerD	NA
UHGV-0129731_21	eggNOG-mapper	572479.Hprae_0322	PFAM integrase family protein	NA
UHGV-0129731_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129731_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129731_21	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0129731_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0129731_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129731_22	UniRef90	UniRef90_A0A1C6C0K5	HNH endonuclease	NA
UHGV-0129731_22	eggNOG-mapper	1567013.A0A0A7RTK8_9CAUD	HNH endonuclease	NA
UHGV-0129731_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0129731_22	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0129731_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0129731_24	UniRef90	UniRef90_A0A1C6AU54	Phage terminase-like protein, large subunit	NA
UHGV-0129731_24	eggNOG-mapper	1187894.I2E8V1_9CAUD	Phage Terminase	NA
UHGV-0129731_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0129731_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0129731_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0129731_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0129731_25	UniRef90	UniRef90_UPI00100366BE	phage portal protein	NA
UHGV-0129731_25	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0129731_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0129731_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0129731_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0129731_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0129731_26	Pfam	PF13780	NA	DUF4176
UHGV-0129731_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0129731_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0129731_27	UniRef90	UniRef90_A0A7V8L3M5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0129731_27	eggNOG-mapper	500633.CLOHIR_00366	Belongs to the peptidase S14 family	NA
UHGV-0129731_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0129731_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0129731_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0129731_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0129731_28	UniRef90	UniRef90_UPI000FCAA144	phage major capsid protein	NA
UHGV-0129731_28	eggNOG-mapper	393480.FNP_1688	Phage capsid family	NA
UHGV-0129731_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0129731_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0129731_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0129731_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0129731_29	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0129731_29	UniRef90	UniRef90_A0A5C0SIB4	Phage gp6-like head-tail connector protein	NA
UHGV-0129731_29	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0129731_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0129731_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0129731_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0129731_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-0129731_30	UniRef90	UniRef90_UPI0008295E1C	phage head closure protein	NA
UHGV-0129731_30	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0129731_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0129731_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0129731_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0129731_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0129731_31	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0129731_31	eggNOG-mapper	318464.IO99_13715	NA	NA
UHGV-0129731_31	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0129731_32	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0129731_32	UniRef90	UniRef90_A0A3A9BH36	Phage tail tape measure protein	NA
UHGV-0129731_32	eggNOG-mapper	1235793.C809_02672	Phage-related minor tail protein	NA
UHGV-0129731_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0129731_32	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0129731_32	COG	COG5283	Phage-related tail protein	NA
UHGV-0129731_32	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0129731_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0129731_33	UniRef90	UniRef90_UPI0009B4B312	HK97 gp10 family phage protein	NA
UHGV-0129731_33	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0129731_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0129731_33	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0129731_34	PHROG	phrog_525	NA	unknown function
UHGV-0129731_34	eggNOG-mapper	318464.IO99_13730	NA	NA
UHGV-0129731_34	Pfam	PF20765	NA	DUF6838
UHGV-0129731_34	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0129731_35	PHROG	phrog_1480	tail sheath	tail
UHGV-0129731_35	UniRef90	UniRef90_A0A6P1MIP1	Phage tail protein	NA
UHGV-0129731_35	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0129731_35	Pfam	PF18283	Carbohydrate binding module 77	CBM77
UHGV-0129731_35	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0129731_35	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0129731_36	PHROG	phrog_365	tail protein	tail
UHGV-0129731_36	UniRef90	UniRef90_UPI0008299DE3	phage tail tube protein	NA
UHGV-0129731_36	eggNOG-mapper	97138.C820_00608	Phage tail tube protein	NA
UHGV-0129731_36	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0129731_37	Pfam	PF10844	NA	DUF2577
UHGV-0129731_38	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0129731_38	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0129731_38	UniRef90	UniRef90_UPI00145A5852	toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0129731_38	eggNOG-mapper	352165.HMPREF7215_1718	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0129731_38	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0129731_38	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0129731_39	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0129731_39	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0129731_39	UniRef90	UniRef90_A0A412DVQ0	HicB family protein	NA
UHGV-0129731_39	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0129731_39	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0129731_39	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0129731_40	UniRef90	UniRef90_A0A895Y9Q9	NA	NA
UHGV-0129731_40	eggNOG-mapper	97138.C820_00600	NA	NA
UHGV-0129731_40	Pfam	PF10934	NA	DUF2634
UHGV-0129731_40	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0129731_40	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0129731_41	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0129731_41	PHROG	phrog_400	tail protein	tail
UHGV-0129731_41	UniRef90	UniRef90_A0A2X0XIM1	Phage protein D	NA
UHGV-0129731_41	eggNOG-mapper	97138.C820_00602	Late control gene D protein	NA
UHGV-0129731_41	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0129731_41	COG	COG3500	NA	NA
UHGV-0129731_41	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0129731_42	PHROG	phrog_521	tail protein	tail
UHGV-0129731_42	UniRef90	UniRef90_UPI001C10CB82	NA	NA
UHGV-0129731_42	eggNOG-mapper	1449063.JMLS01000016_gene947	NA	NA
UHGV-0129731_42	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0129731_42	COG	COG3778	NA	NA
UHGV-0129731_42	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0129731_43	PHROG	phrog_5184	NA	unknown function
UHGV-0129731_43	UniRef90	UniRef90_A0A7X5CTQ5	Phage portal protein	NA
UHGV-0129731_43	eggNOG-mapper	97138.C820_00603	LysM domain	NA
UHGV-0129731_43	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0129731_43	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0129731_44	PHROG	phrog_6	baseplate protein	tail
UHGV-0129731_44	UniRef90	UniRef90_UPI00119DEAE9	baseplate J/gp47 family protein	NA
UHGV-0129731_44	eggNOG-mapper	293826.Amet_2430	Baseplate J-like protein	NA
UHGV-0129731_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0129731_44	COG	COG3299	NA	NA
UHGV-0129731_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0129731_45	eggNOG-mapper	1121090.KB894686_gene3034	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0129731_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0129731_45	Structural annotation	TIGR03805	NA	NA
UHGV-0129731_48	PHROG	phrog_199	holin	lysis
UHGV-0129731_48	UniRef90	UniRef90_A0A174N8Q9	Phage-related holin (Lysis protein)	NA
UHGV-0129731_48	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0129731_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0129731_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0129731_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0129731_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0129731_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0129731_49	PHROG	phrog_670	endolysin	lysis
UHGV-0129731_49	UniRef90	UniRef90_UPI001D021BE9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0129731_49	eggNOG-mapper	642492.Clole_0760	Ami_2	NA
UHGV-0129731_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0129731_49	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0129731_49	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0129731_52	PHROG	phrog_11900	NA	unknown function
UHGV-0129731_52	UniRef90	UniRef90_UPI00164C74DF	Fic family protein	NA
UHGV-0129731_52	eggNOG-mapper	1410631.JHWZ01000003_gene1529	Fic/DOC family	NA
UHGV-0129731_52	COG	COG3177	Fic family protein	NA
UHGV-0129731_53	eggNOG-mapper	339671.Asuc_0825	Filamentation induced by cAMP protein fic	NA
UHGV-0129731_53	COG	COG3177	Fic family protein	NA
UHGV-0129731_54	UniRef90	UniRef90_A0A1Y4N957	SWIM-type domain-containing protein	NA
UHGV-0129731_54	eggNOG-mapper	1122216.AUHW01000029_gene1934	Zinc finger, swim domain protein	NA
UHGV-0129731_54	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0129731_54	COG	COG4715	NA	NA
UHGV-0129731_55	eggNOG-mapper	469615.FGAG_01154	zinc ion binding	NA
UHGV-0129731_55	COG	COG4715	NA	NA