UHGV-0129838

Genome information

Genome length 26,022 bps

CDS count 40

Completeness 69.34% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129838
vOTU ID	vOTU-033949
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330687
BioSample	SAMN00715227
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.42
Jumbo phage	No

Genome content
Genome length	26,022 bps
GC content	39.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.04%
Average CDS length	609.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129838_1	PHROG	phrog_18218	NA	unknown function
UHGV-0129838_1	UniRef90	UniRef90_A0A396PU34	Ribonuclease	NA
UHGV-0129838_1	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0129838_1	Structural annotation	PF06946	NA	NA
UHGV-0129838_2	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-0129838_2	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0129838_3	PHROG	phrog_2310	NA	unknown function
UHGV-0129838_3	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0129838_4	PHROG	phrog_16164	NA	unknown function
UHGV-0129838_4	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0129838_4	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0129838_5	PHROG	phrog_1382	NA	unknown function
UHGV-0129838_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0129838_5	Structural annotation	NF040910	NA	NA
UHGV-0129838_6	PHROG	phrog_30034	NA	unknown function
UHGV-0129838_6	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-0129838_6	Structural annotation	PF17642	NA	NA
UHGV-0129838_7	PHROG	phrog_13141	NA	unknown function
UHGV-0129838_7	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0129838_7	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0129838_7	Structural annotation	PF20747, NF012201	NA	NA
UHGV-0129838_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0129838_8	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0129838_8	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0129838_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0129838_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0129838_9	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0129838_9	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0129838_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0129838_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0129838_10	UniRef90	UniRef90_UPI000E548070	PblA	NA
UHGV-0129838_10	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0129838_10	COG	COG1511	NA	NA
UHGV-0129838_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0129838_11	PHROG	phrog_706	NA	unknown function
UHGV-0129838_11	UniRef90	UniRef90_A0A6N2USM9	Bacteriophage Gp15 protein	NA
UHGV-0129838_11	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0129838_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0129838_11	Structural annotation	PF06854	NA	NA
UHGV-0129838_12	PHROG	phrog_4450	NA	unknown function
UHGV-0129838_12	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0129838_12	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0129838_12	Pfam	PF20378	NA	DUF6673
UHGV-0129838_12	Structural annotation	PF20378	NA	NA
UHGV-0129838_13	PHROG	phrog_3099	NA	unknown function
UHGV-0129838_13	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0129838_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0129838_14	PHROG	phrog_3266	tail completion	connector
UHGV-0129838_14	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0129838_14	Structural annotation	PF12691	NA	NA
UHGV-0129838_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0129838_15	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0129838_15	eggNOG-mapper	658655.HMPREF0988_02557	NA	NA
UHGV-0129838_15	Structural annotation	PF11114	NA	NA
UHGV-0129838_16	PHROG	phrog_3366	NA	unknown function
UHGV-0129838_16	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0129838_16	Pfam	PF20536	NA	DUF6751
UHGV-0129838_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0129838_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0129838_17	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0129838_18	UniRef90	UniRef90_UPI001C8DA5AC	head fiber protein	NA
UHGV-0129838_18	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0129838_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0129838_19	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0129838_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0129838_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0129838_20	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0129838_20	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0129838_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0129838_20	Structural annotation	PF06810	NA	NA
UHGV-0129838_21	PHROG	phrog_13199	NA	unknown function
UHGV-0129838_21	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0129838_22	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0129838_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0129838_23	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0129838_23	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0129838_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0129838_23	COG	COG2369	NA	NA
UHGV-0129838_23	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0129838_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0129838_24	UniRef90	UniRef90_A0A6N2UPF7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0129838_24	eggNOG-mapper	742723.HMPREF9477_00910	NA	NA
UHGV-0129838_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0129838_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0129838_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0129838_25	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-0129838_25	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0129838_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0129838_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0129838_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129838_25	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0129838_26	PHROG	phrog_2412	NA	unknown function
UHGV-0129838_26	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0129838_26	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0129838_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0129838_27	UniRef90	UniRef90_A0A1C5X3K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0129838_27	eggNOG-mapper	742723.HMPREF9477_00916	NA	NA
UHGV-0129838_27	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0129838_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0129838_29	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0129838_29	UniRef90	UniRef90_A0A416CEK9	Methyltransferase	NA
UHGV-0129838_29	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0129838_29	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0129838_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0129838_29	COG	COG0863	DNA modification methylase	NA
UHGV-0129838_29	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0129838_30	PHROG	phrog_8684	NA	unknown function
UHGV-0129838_30	UniRef90	UniRef90_A0A417SVB1	YopX domain-containing protein	NA
UHGV-0129838_30	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0129838_30	Pfam	PF09643	YopX protein	YopX
UHGV-0129838_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0129838_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0129838_31	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129838_31	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-0129838_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0129838_31	Structural annotation	PF13392	NA	NA
UHGV-0129838_32	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129838_32	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0129838_32	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0129838_33	PHROG	phrog_10192	NA	unknown function
UHGV-0129838_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0129838_34	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0129838_34	UniRef90	UniRef90_A0A174J3W3	LexA repressor	NA
UHGV-0129838_34	eggNOG-mapper	545697.HMPREF0216_00360	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0129838_34	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0129838_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0129838_34	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-0129838_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0129838_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0129838_36	UniRef90	UniRef90_S2ZLG6	IstB_IS21 domain-containing protein	NA
UHGV-0129838_36	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0129838_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0129838_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0129838_36	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0129838_37	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0129838_37	UniRef90	UniRef90_UPI001D090F0C	conserved phage C-terminal domain-containing protein	NA
UHGV-0129838_37	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0129838_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129838_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0129838_38	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129838_38	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0129838_38	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0129838_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0129838_38	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0129838_39	PHROG	phrog_7566	NA	unknown function
UHGV-0129838_39	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0129838_39	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0129838_40	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129838_40	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0129838_40	Pfam	PF12684	NA	DUF3799
UHGV-0129838_40	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA