UHGV-0129925

Genome information

Genome length 59,484 bps

CDS count 73

Completeness 95.18% (high-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129925
vOTU ID	vOTU-070994
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_329536
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.21
Jumbo phage	No

Genome content
Genome length	59,484 bps
GC content	49.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.19%
Average CDS length	737.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129925_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0129925_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0129925_1	UniRef90	UniRef90_UPI0014759289	phage antirepressor	NA
UHGV-0129925_1	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0129925_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0129925_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0129925_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0129925_1	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0129925_2	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0129925_2	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0129925_3	PHROG	phrog_25045	NA	unknown function
UHGV-0129925_3	UniRef90	UniRef90_A0A2S0M9C6	LysM domain-containing protein	NA
UHGV-0129925_3	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0129925_3	Pfam	PF01476	LysM domain	LysM
UHGV-0129925_3	COG	COG1388	LysM repeat	NA
UHGV-0129925_3	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0129925_4	Structural annotation	PF20892	NA	NA
UHGV-0129925_5	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0129925_5	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-0129925_5	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0129925_5	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0129925_5	Structural annotation	PF05565	NA	NA
UHGV-0129925_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0129925_6	UniRef90	UniRef90_UPI00147348AC	ERF family protein	NA
UHGV-0129925_6	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0129925_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-0129925_6	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0129925_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0129925_7	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0129925_7	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0129925_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0129925_8	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129925_8	UniRef90	UniRef90_UPI001980A387	HNH endonuclease	NA
UHGV-0129925_8	eggNOG-mapper	547559.Nmag_0239	HNH endonuclease	NA
UHGV-0129925_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0129925_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129925_8	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0129925_9	PHROG	phrog_15768	NA	unknown function
UHGV-0129925_9	UniRef90	UniRef90_A0A2S0M9A1	Helix-turn-helix domain-containing protein	NA
UHGV-0129925_9	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0129925_9	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0129925_10	Structural annotation	PF11417	NA	NA
UHGV-0129925_11	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0129925_12	PHROG	phrog_37395	NA	unknown function
UHGV-0129925_13	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0129925_13	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0129925_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0129925_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129925_14	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0129925_14	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0129925_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0129925_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0129925_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0129925_14	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0129925_15	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0129925_15	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0129925_15	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0129925_15	eggNOG-mapper	1173029.JH980292_gene2745	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0129925_15	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0129925_15	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0129925_15	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0129925_16	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0129925_16	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0129925_16	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0129925_16	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0129925_16	Pfam	PF00692	dUTPase	dUTPase
UHGV-0129925_16	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0129925_16	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0129925_17	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0129925_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0129925_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0129925_18	UniRef90	UniRef90_A0A413QUD9	Cytosine-specific methyltransferase	NA
UHGV-0129925_18	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0129925_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0129925_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0129925_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0129925_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0129925_18	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0129925_19	PHROG	phrog_236	nucleotide kinase	other
UHGV-0129925_19	UniRef90	UniRef90_A0A2S0MAB1	NA	NA
UHGV-0129925_19	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0129925_19	Pfam	PF11753	NA	DUF3310
UHGV-0129925_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0129925_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0129925_21	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0129925_21	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0129925_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0129925_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0129925_23	Structural annotation	PF21098, MF_01503	NA	NA
UHGV-0129925_25	PHROG	phrog_98	NA	unknown function
UHGV-0129925_25	UniRef90	UniRef90_A0A2S0M9I6	YopX domain-containing protein	NA
UHGV-0129925_25	eggNOG-mapper	888055.HMPREF9015_01088	YopX protein	NA
UHGV-0129925_25	Pfam	PF09643	YopX protein	YopX
UHGV-0129925_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0129925_27	Structural annotation	PF07867, MF_01302_B, NF001109	NA	NA
UHGV-0129925_30	PHROG	phrog_872	NA	unknown function
UHGV-0129925_30	UniRef90	UniRef90_UPI00147548DC	NA	NA
UHGV-0129925_30	eggNOG-mapper	596323.HMPREF0554_0262	NA	NA
UHGV-0129925_30	Pfam	PF11195	NA	DUF2829
UHGV-0129925_30	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0129925_30	Structural annotation	PF11195, PF14083	NA	NA
UHGV-0129925_31	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129925_31	UniRef90	UniRef90_A0A2S0M9E4	HNH endonuclease	NA
UHGV-0129925_31	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-0129925_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0129925_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129925_35	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0129925_35	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0129925_35	UniRef90	UniRef90_A0A2S0M9C7	Cytidine deaminase	NA
UHGV-0129925_35	eggNOG-mapper	693746.OBV_35660	MafB19-like deaminase	NA
UHGV-0129925_35	PADLOC	dCTPase	NA	NA
UHGV-0129925_35	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0129925_35	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0129925_35	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0129925_36	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0129925_36	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0129925_37	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0129925_37	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-0129925_37	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0129925_37	Structural annotation	MF_01865, NF038361, COG0621	NA	NA
UHGV-0129925_38	PHROG	phrog_16123	NA	unknown function
UHGV-0129925_38	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0129925_40	eggNOG-mapper	1064535.MELS_1121	nuclear chromosome segregation	NA
UHGV-0129925_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0129925_41	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0129925_42	PHROG	phrog_16123	NA	unknown function
UHGV-0129925_42	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0129925_43	PHROG	phrog_13890	NA	unknown function
UHGV-0129925_43	UniRef90	UniRef90_A0A3R6IUV1	Antitoxin	NA
UHGV-0129925_43	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0129925_43	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0129925_45	Structural annotation	PF07867	NA	NA
UHGV-0129925_46	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0129925_46	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0129925_46	eggNOG-mapper	716541.ECL_03566	transposase activity	NA
UHGV-0129925_46	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0129925_47	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0129925_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129925_48	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0129925_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0129925_49	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0129925_49	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0129925_49	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0129925_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0129925_49	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0129925_51	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0129925_52	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0129925_52	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0129925_52	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0129925_52	Pfam	PF17236	NA	DUF5309
UHGV-0129925_52	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0129925_54	Structural annotation	PF20387	NA	NA
UHGV-0129925_55	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0129925_55	Structural annotation	PF20387	NA	NA
UHGV-0129925_56	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0129925_56	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0129925_56	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0129925_57	PHROG	phrog_5417	NA	unknown function
UHGV-0129925_57	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0129925_57	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0129925_57	Structural annotation	PF12571	NA	NA
UHGV-0129925_59	PHROG	phrog_6465	tail protein	tail
UHGV-0129925_59	eggNOG-mapper	5722.XP_001292791.1	Phage tail repeat like	NA
UHGV-0129925_60	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0129925_60	Structural annotation	PF14301	NA	NA
UHGV-0129925_61	PHROG	phrog_5717	tail protein	tail
UHGV-0129925_61	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0129925_61	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0129925_61	COG	COG4675	Phage tail collar domain	NA
UHGV-0129925_62	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0129925_62	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0129925_62	Structural annotation	NF012201	NA	NA
UHGV-0129925_64	KOfam	K14059	int; integrase	NA
UHGV-0129925_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0129925_64	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0129925_64	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0129925_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129925_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129925_64	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0129925_66	PHROG	phrog_28789	NA	unknown function
UHGV-0129925_66	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0129925_66	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0129925_67	PHROG	phrog_34863	NA	unknown function
UHGV-0129925_67	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0129925_67	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0129925_67	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0129925_67	COG	COG1388	LysM repeat	NA
UHGV-0129925_67	Structural annotation	PF21277	NA	NA
UHGV-0129925_68	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0129925_69	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0129925_69	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0129925_70	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0129925_71	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0129925_71	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0129925_71	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0129925_71	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0129925_73	PHROG	phrog_9854	NA	unknown function
UHGV-0129925_73	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0129925_73	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0129925_73	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0129925_73	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0129925_73	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0129925_73	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0129925_73	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA