UHGV-0129963

Genome information

Genome length 35,113 bps

CDS count 55

Completeness 96.86% (high-quality)

geNomad score 0.9678

Prediction confidence Confident

Genome information
Genome ID	UHGV-0129963
vOTU ID	vOTU-012449
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333242
BioSample	SAMN00792022
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9678
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.42
Jumbo phage	No

Genome content
Genome length	35,113 bps
GC content	56.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.78%
Average CDS length	585.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0129963_1	PHROG	phrog_4105	NA	unknown function
UHGV-0129963_2	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0129963_2	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0129963_2	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0129963_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0129963_2	Structural annotation	PF00196, PF04545, NF006146, NF003257, COG2771	NA	NA
UHGV-0129963_5	PHROG	phrog_521	tail protein	tail
UHGV-0129963_5	UniRef90	UniRef90_UPI0019566A4F	NA	NA
UHGV-0129963_5	eggNOG-mapper	1294142.CINTURNW_0308	NA	NA
UHGV-0129963_5	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0129963_5	COG	COG3778	NA	NA
UHGV-0129963_5	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0129963_6	PHROG	phrog_6	baseplate protein	tail
UHGV-0129963_6	UniRef90	UniRef90_A0A352RPM8	Baseplate J protein	NA
UHGV-0129963_6	eggNOG-mapper	756499.Desde_4124	Baseplate J-like protein	NA
UHGV-0129963_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0129963_6	COG	COG3299	NA	NA
UHGV-0129963_6	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0129963_7	PHROG	phrog_120	baseplate protein	tail
UHGV-0129963_7	UniRef90	UniRef90_A0A352RPM9	XkdS-like protein	NA
UHGV-0129963_7	eggNOG-mapper	1007096.BAGW01000036_gene2671	NA	NA
UHGV-0129963_7	Pfam	PF10934	NA	DUF2634
UHGV-0129963_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0129963_7	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0129963_8	PHROG	phrog_579	NA	unknown function
UHGV-0129963_8	UniRef90	UniRef90_UPI0019586661	NA	NA
UHGV-0129963_8	Pfam	PF10844	NA	DUF2577
UHGV-0129963_8	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0129963_9	PHROG	phrog_400	tail protein	tail
UHGV-0129963_9	UniRef90	UniRef90_A0A7S7J193	Alpha/beta hydrolase	NA
UHGV-0129963_9	eggNOG-mapper	1291050.JAGE01000001_gene2933	NLP P60 protein	NA
UHGV-0129963_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0129963_9	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0129963_10	PHROG	phrog_380	endolysin	lysis
UHGV-0129963_10	UniRef90	UniRef90_A0A352RPN2	Peptidoglycan-binding protein	NA
UHGV-0129963_10	eggNOG-mapper	1297617.JPJD01000034_gene677	LysM domain	NA
UHGV-0129963_10	Pfam	PF01476	LysM domain	LysM
UHGV-0129963_10	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0129963_10	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0129963_11	PHROG	phrog_33570	NA	unknown function
UHGV-0129963_11	UniRef90	UniRef90_A0A352RPN3	Phage tail protein	NA
UHGV-0129963_11	eggNOG-mapper	1291050.JAGE01000001_gene2931	tape measure	NA
UHGV-0129963_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0129963_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0129963_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0129963_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0129963_12	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0129963_12	UniRef90	UniRef90_UPI00067E8B26	XkdN	NA
UHGV-0129963_12	eggNOG-mapper	1297617.JPJD01000034_gene680	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0129963_12	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0129963_12	Structural annotation	PF08890	NA	NA
UHGV-0129963_13	PHROG	phrog_365	tail protein	tail
UHGV-0129963_13	UniRef90	UniRef90_A0A352RPN6	Phage portal protein	NA
UHGV-0129963_13	eggNOG-mapper	1291050.JAGE01000001_gene2928	Phage tail tube protein	NA
UHGV-0129963_13	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0129963_13	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0129963_14	PHROG	phrog_1480	tail sheath	tail
UHGV-0129963_14	UniRef90	UniRef90_A0A352RPN7	Phage tail sheath protein	NA
UHGV-0129963_14	eggNOG-mapper	1297617.JPJD01000034_gene682	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0129963_14	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0129963_15	eggNOG-mapper	742738.HMPREF9460_00883	NA	NA
UHGV-0129963_15	Pfam	PF20765	NA	DUF6838
UHGV-0129963_15	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0129963_16	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0129963_17	PHROG	phrog_29848	NA	unknown function
UHGV-0129963_17	eggNOG-mapper	693746.OBV_20070	NA	NA
UHGV-0129963_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0129963_18	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0129963_18	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0129963_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0129963_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0129963_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0129963_19	UniRef90	UniRef90_UPI001BB4749F	phage major capsid protein	NA
UHGV-0129963_19	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0129963_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0129963_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0129963_19	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0129963_20	PHROG	phrog_16951	NA	unknown function
UHGV-0129963_20	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0129963_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0129963_21	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129963_21	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0129963_21	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0129963_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0129963_21	Structural annotation	PF17375	NA	NA
UHGV-0129963_23	PHROG	phrog_3896	NA	unknown function
UHGV-0129963_23	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0129963_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0129963_24	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0129963_24	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0129963_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0129963_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0129963_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0129963_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0129963_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0129963_26	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0129963_26	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0129963_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0129963_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0129963_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0129963_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0129963_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0129963_27	UniRef90	UniRef90_UPI001BB47B37	P27 family phage terminase small subunit	NA
UHGV-0129963_27	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0129963_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0129963_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0129963_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0129963_28	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0129963_28	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0129963_28	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0129963_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0129963_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0129963_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0129963_29	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0129963_29	Structural annotation	PF21578	NA	NA
UHGV-0129963_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0129963_33	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0129963_33	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0129963_33	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0129963_34	PHROG	phrog_38832	NA	unknown function
UHGV-0129963_34	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0129963_35	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0129963_35	Pfam	PF04448	NA	DUF551
UHGV-0129963_35	Structural annotation	PF04448	NA	NA
UHGV-0129963_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0129963_37	PHROG	phrog_27290	NA	unknown function
UHGV-0129963_37	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0129963_37	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0129963_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0129963_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0129963_37	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0129963_38	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0129963_38	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0129963_38	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0129963_38	eggNOG-mapper	1007096.BAGW01000011_gene2363	Anion-transporting ATPase	NA
UHGV-0129963_38	Pfam	PF13614	AAA domain	AAA_31
UHGV-0129963_38	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0129963_38	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0129963_40	PHROG	phrog_27610	NA	unknown function
UHGV-0129963_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0129963_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0129963_41	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0129963_41	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0129963_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0129963_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0129963_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-0129963_41	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0129963_42	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0129963_42	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0129963_42	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0129963_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0129963_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0129963_42	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0129963_45	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0129963_45	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0129963_45	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0129963_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0129963_45	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0129963_45	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0129963_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129963_46	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0129963_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0129963_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0129963_47	UniRef90	UniRef90_A0A8J6JJS4	Helix-turn-helix transcriptional regulator	NA
UHGV-0129963_47	eggNOG-mapper	237609.PSAKL28_16870	transcriptional regulator	NA
UHGV-0129963_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0129963_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0129963_48	Structural annotation	PF09202, MF_01819, NF002926, COG3432	NA	NA
UHGV-0129963_50	UniRef90	UniRef90_UPI001F3372B8	helix-turn-helix domain-containing protein	NA
UHGV-0129963_50	eggNOG-mapper	397291.C804_05804	TRANSCRIPTIONal	NA
UHGV-0129963_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0129963_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0129963_52	eggNOG-mapper	742738.HMPREF9460_04037	Transcriptional	NA
UHGV-0129963_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0129963_54	PHROG	phrog_5783	NA	unknown function
UHGV-0129963_54	UniRef90	UniRef90_A0A1C7FL48	Nuclease	NA
UHGV-0129963_54	eggNOG-mapper	525255.HMPREF0077_1122	NYN domain	NA
UHGV-0129963_54	Pfam	PF01936	NYN domain	NYN
UHGV-0129963_54	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0129963_54	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0129963_55	KOfam	K14059	int; integrase	NA
UHGV-0129963_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0129963_55	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0129963_55	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0129963_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0129963_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0129963_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA